GetOverlappingSamples: Find overlapping samples in single-cell and bulk data

In BisqueRNA: Decomposition of Bulk Expression with Single-Cell Sequencing

Description

Find overlapping samples in single-cell and bulk data

Usage

GetOverlappingSamples(sc.eset, bulk.eset, subject.names, verbose)

Arguments

sc.eset	Expression Set with single-cell data
bulk.eset	Expression Set with bulk data
subject.names	A character string. Name of phenoData attribute in sc.eset that indicates individual ID (that would be found in bulk.eset if overlapping)
verbose	Boolean. Print logging info

Value

samples A list with attributes overlapping and remaining. Each attribute refers to a character vector that lists the samples found in both datasets and samples found only in bulk, respectively

BisqueRNA documentation built on May 24, 2021, 1:06 a.m.