CalculateSCCellProportions: Calculate cell proportions based on single-cell data

In BisqueRNA: Decomposition of Bulk Expression with Single-Cell Sequencing

Description

Returns proportion of each cell type out of total cells for each individual in the single-cell Expression Set

Usage

CalculateSCCellProportions(sc.eset, subject.names, cell.types)

Arguments

sc.eset	Expression Set with single-cell data
subject.names	A character string. Name of phenoData attribute in sc.eset that indicates individual ID.
cell.types	A character string. Name of phenoData attribute in sc.eset that indicates cell type

Value

sc.props Matrix. Cell proportions with number of cell types rows by number of individuals columns

BisqueRNA documentation built on May 24, 2021, 1:06 a.m.