Description Usage Arguments Value
Estimate cell type proportions using first PC of expression matrix
1 | EstimatePCACellTypeProportions(x, weighted = FALSE, w = NULL)
|
x |
A sample by gene bulk expression matrix. Genes should be marker genes |
weighted |
Boolean. If weighted=TRUE, multiply scaled gene expression by gene weights |
w |
Numeric vector. Weights of genes |
ret List. Attribute pcs contains matrix of PCs, where PC1 should be used as estimates for cell type abundances Attribute sdev contains eigenvalues of eigendecomposition of var-covar matrix. The 1st eigenvalue should explain most of the variance. Attribute genes contains names of genes.
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.