print.SymbolicSimulation: Print simulation results

In BoolNet: Construction, Simulation and Analysis of Boolean Networks

Print simulation results

Description

Specialized print method to print the information stored in an AttractorInfo object. By default, the states of the identified attractors are printed in a binary encoding. Furthermore, the state transition graph and the sequences from the start states to the attractors can be printed. The method can print either the full states, or only the active genes of the states.

Usage

## S3 method for class 'SymbolicSimulation'
print(x, 
                                   activeOnly = FALSE, 
                                   sequences = FALSE, 
                                   graph = FALSE, 
                                   attractors = TRUE, 
                                   ...)

Arguments

x	An object of class SymbolicSimulation to be printed.
activeOnly	If set to true, a state is represented by a list of active genes (i.e., genes which are set to 1). If set to false, a state is represented by a binary vector with one entry for each gene, specifying whether the gene is active or not. Defaults to FALSE.
sequences	If set to true and if simulateSymbolicModel has been started with returnSequences=TRUE, the sequences from the start states to the attractors are printed. Defaults to FALSE.
graph	If set to true if simulateSymbolicModel has been started with returnGraph=TRUE, the state transition table is printed. Defaults to FALSE.
attractors	If set to true if simulateSymbolicModel has been started with returnAttractor=TRUE, the state transition table is printed. Defaults to TRUE.
...	Further parameters for the print method. Currently not used.

Value

Invisibly returns the printed object

See Also

simulateSymbolicModel

BoolNet documentation built on Oct. 2, 2023, 5:08 p.m.