cluster_analysis_sub: cluster_analysis_sub

In CIARA: Cluster Independent Algorithm for Rare Cell Types Identification

cluster_analysis_sub

Description

cluster_analysis_sub

Usage

cluster_analysis_sub(
  raw_counts,
  resolution,
  neighbors,
  max_dimension,
  name_cluster
)

Arguments

raw_counts	Raw count matrix (n_genes X n_cells).
resolution	Numeric value specifying the parameter resolution used in the Seurat function FindClusters.
neighbors	Numeric value specifying the parameter k.param in the Seurat function FindNeighbors
max_dimension	Numeric value specifying the maximum number of the PCA dimensions used in the parameter dims for the Seurat function FindNeighbors
name_cluster	Character.Name of the original cluster for which the sub clustering is done.

Value

Seurat object including raw and normalized counts matrices and cluster result.

Author(s)

Gabriele Lubatti [e-mail]

See Also

https://www.rdocumentation.org/packages/Seurat/versions/4.0.1/topics/RunPCA https://www.rdocumentation.org/packages/Seurat/versions/4.0.1/topics/FindVariableFeatures

CIARA documentation built on March 18, 2022, 6:48 p.m.