selection_localized_genes: selection_localized_genes

In CIARA: Cluster Independent Algorithm for Rare Cell Types Identification

selection_localized_genes

Description

selection_localized_genes

Usage

selection_localized_genes(
  norm_counts,
  localized_genes,
  min_number_cells = 4,
  max_number_genes = 10
)

Arguments

norm_counts	Norm count matrix (genes X cells).
localized_genes	vector of highly localized genes as provided by the last element of the list given as output from CIARA_mixing_final.
min_number_cells	Minimum number of cells where a genes must be expressed (> 0).
max_number_genes	Maximum number of genes to show for each cell in the interactive plot from plot_interactive.

Value

Character vector where each entry contains the name of the top max_number_genes for the corresponding cell.

Author(s)

Gabriele Lubatti [e-mail]

CIARA documentation built on March 18, 2022, 6:48 p.m.