get_background_full: get_background_full

In CIARA: Cluster Independent Algorithm for Rare Cell Types Identification

get_background_full

Description

get_background_full

Usage

get_background_full(
  norm_matrix,
  threshold = 1,
  n_cells_low = 3,
  n_cells_high = 20
)

Arguments

norm_matrix	Norm count matrix (n_genes X n_cells).
threshold	threshold in expression for a given gene
n_cells_low	minimum number of cells where a gene is expressed at a level above threshold
n_cells_high	maximum number of cells where a gene is expressed at a level above threshold

Value

Character vector with all genes expressed at a level higher than threshold in a number of cells between n_cells and n_cells_high.

Author(s)

Gabriele Lubatti [e-mail]

CIARA documentation built on March 18, 2022, 6:48 p.m.