plot_genes_sum: plot_genes_sum

In CIARA: Cluster Independent Algorithm for Rare Cell Types Identification

plot_genes_sum

Description

The sum of each gene in genes_relevant across all cells is first normalized to 1. Then for each cell, the sum from the (normalized) genes expression is computed and shown in the output plot.

Usage

plot_genes_sum(coordinate_umap, norm_counts, genes_relevant, name_title)

Arguments

coordinate_umap	Data frame with dimensionality reduction coordinates. Number of rows must be equal to the number of cells
norm_counts	Norm count matrix (genes X cells).
genes_relevant	Vector with gene names for which we want to visualize the sum in each cell.
name_title	Character value.

Value

ggplot2 object.

Author(s)

Gabriele Lubatti [e-mail]

See Also

https://CRAN.R-project.org/package=ggplot2

CIARA documentation built on March 18, 2022, 6:48 p.m.