plot_heatmap_marker: plot_heatmap_marker

In CIARA: Cluster Independent Algorithm for Rare Cell Types Identification

plot_heatmap_marker

Description

plot_heatmap_marker

Usage

plot_heatmap_marker(
  marker_top,
  marker_all_cluster,
  cluster,
  condition,
  norm_counts,
  text_size
)

Arguments

marker_top	First element returned by markers_cluster_seurat
marker_all_cluster	Second element returned by markers_cluster_seurat
cluster	Vector of length equal to the number of cells, with cluster assignment.
condition	Vector or length equal to the number of cells, specifying the condition of the cells (i.e. batch, dataset of origin..)
norm_counts	Norm count matrix (genes X cells).
text_size	Size of the text in the heatmap plot.

Value

Heatmap class object.

Author(s)

Gabriele Lubatti [e-mail]

See Also

https://www.rdocumentation.org/packages/ComplexHeatmap/versions/1.10.2/topics/Heatmap

CIARA documentation built on March 18, 2022, 6:48 p.m.