BatCINOEDV | Batch mode for using CINOEDV |
CheckVerticeType | Test Vertice Type |
CINOEDV_Main | Co-Information based N-Order Epistasis Detector and... |
CINOEDV-package | Co-Information based N-Order Epistasis Detector and... |
class | Class labels of samples |
CoInformation | Co-Information Computation |
CombinationEntropy | Combination Entropy Computation |
ConstructCompleteGraph | Construct complete graph |
DegreeAnalysis | Degree analysis of real vertices |
Edges | Edges of constructed graphs |
EvaluationMeasure | Evaluation Measure |
ExhaustiveSearch | Exhaustive Search |
FiveEffect | Interaction Effects of five-SNP combinations |
FourEffect | Interaction Effects of four-SNP combinations |
HeatMapFactor | Heatmap function |
InputData | Input data |
InstallPackage | Install CINOEDV used packages |
NetworkData | Collect vertices and edges for network construction |
NormalizationEffect | Normalization Effect |
NotationName | Notation of real SNP Name |
PlotTopEffects | Plot top n effects with their corresponding SNPs or... |
PSOSearch | PSO Search |
pts | SNP data |
SingleEffect | Main Effects of SNPs |
SubgraphSplit | Split subgraphs |
TestMaxOrder | Test the parameter MaxOrder |
TestNumberThreshold | Test the parameter NumberThreshold |
TestPSOParameters | Check the PSO parameters |
TestRatioThreshold | Test the parameter RatioThreshold |
TestSNPNameFile | Test the parameter TestSNPNameFile |
ThreeEffect | Interaction Effects of three-SNP combinations |
tic | Start stopwatch timer |
toc | Read elasped time from stopwatch |
TwoEffect | Interaction Effects of two-SNP combinations |
Vertices | Vertices of constructed graphs |
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