Description Usage Arguments Value Author(s) References Examples
View source: R/PlotTopEffects.R
Effects can be respectively considered as independent effects and combination effects. Independent Effect: Effect that only the SNP or SNP-combination has. Combination Effect: Effect is the addition of all effects of SNP-combination and its sub-combinations. This function plots top n effects (including Independent Effect and Combination Effect) with their corresponding SNPs or SNP-combinations.
1 | PlotTopEffects(Vertices, Top = 20, SaveFileName = "")
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Vertices |
matrix. Vertices of constructed graphs, including real vertices and virtual vertices. The first column represents SNP ID or SNP-combination ID. The second column represents effect value. The third column represents the class of vertices, "1" -> real vertice, others -> virtual vertice. |
Top |
numeric. Top n Effects. By default, Top <- 20. |
SaveFileName |
character. Basic file name for saving figure. By default, SaveFileName <- "". |
TopEffect |
numeric. Top independent effects of SNPs or SNP-combinations. |
CombinationEffect |
numeric. Top combination effects of SNPs or SNP-combinations. |
Junliang Shang shangjunliang110@163.com
None
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