HeatMapFactor: Heatmap function

In CINOEDV: Co-Information based N-Order Epistasis Detector and Visualizer

Description

This function create a heatmap figure for visualizing how a SNP or a SNP-combination influencing the phenotype.

Usage

HeatMapFactor(pts, class, factor, SaveFileName = "", Title = "")

Arguments

pts	matrix. SNP data. Each row represents a sample. Each column represents a SNP. For the element, 1 -> AA, 2 -> Aa, 3 -> aa.
class	matrix. Class labels of samples. It only has one row. Each column represents a class label. For the element, 1 -> case, 2-> control.
factor	numeric. The considered SNP or SNP-combination. For example, factor <- 5, or factor <- c(2,5)
SaveFileName	character. Basic file name for saving figure. By default, SaveFileName <- "".
Title	character. Title of the heatmap figure. By default, Title <- "".

Value

HeatMapFactors: data.frame. The heatmap data for observing how a SNP or a SNP-combination influencing the phenotype.

Author(s)

Junliang Shang [e-mail]

References

None

Examples

data(pts)
data(class)
factor <- c(2,5)
H <- HeatMapFactor(pts, class, factor, SaveFileName = "", Title = "")
HeatMapFactors <- H$HeatMapFactors

CINOEDV documentation built on May 29, 2017, 9:07 p.m.