Description Usage Arguments Value Author(s) References Examples

View source: R/NormalizationEffect.R

Normalization of main effects, and n-order interaction effects in SingleEffect, TwoEffect, ThreeEffect, FourEffect and FiveEffect respectively.

1 2 | ```
NormalizationEffect(MaxOrder, SingleEffect, TwoEffect,
ThreeEffect, FourEffect, FiveEffect, SaveFileName = "")
``` |

`MaxOrder` |
numeric. The considered maximum order of epistatic interactions. It must be setted as 1, 2, 3, 4, or 5. |

`SingleEffect` |
matrix. main Effects of SNPs. There are 2 columns. The first column saves all SNPs, and the second column saves their corresponding effects. Ddescending save according to their effects. |

`TwoEffect` |
matrix. interaction Effects of two-SNP combinations. There are three columns. The first two columns save all two-SNP combinations, and the last column saves their corresponding effects. Descending save according to their interaction effects. |

`ThreeEffect` |
matrix. interaction Effects of three-SNP combinations. There are four columns. The first three columns save all three-SNP combinations, and the last column saves their corresponding effects. Descending save according to their interaction effects. |

`FourEffect` |
matrix. interaction Effects of four-SNP combinations. There are five columns. The first four columns save all four-SNP combinations, and the last column saves their corresponding effects. Descending save according to their interaction effects. |

`FiveEffect` |
matrix. interaction Effects of five-SNP combinations. There are six columns. The first five columns save all five-SNP combinations, and the last column saves their corresponding effects. Descending save according to their interaction effects. |

`SaveFileName` |
character. Basic file name for saving figure. By default, SaveFileName <- "". |

`SingleEffect` |
matrix. main Effects of SNPs. There are 2 columns. The first column saves all SNPs, and the second column saves their corresponding effects. Ddescending save according to their effects. |

`TwoEffect` |
matrix. interaction Effects of two-SNP combinations. There are three columns. The first two columns save all two-SNP combinations, and the last column saves their corresponding effects. Descending save according to their interaction effects. |

`ThreeEffect` |
matrix. interaction Effects of three-SNP combinations. There are four columns. The first three columns save all three-SNP combinations, and the last column saves their corresponding effects. Descending save according to their interaction effects. |

`FourEffect` |
matrix. interaction Effects of four-SNP combinations. There are five columns. The first four columns save all four-SNP combinations, and the last column saves their corresponding effects. Descending save according to their interaction effects. |

`FiveEffect` |
matrix. interaction Effects of five-SNP combinations. There are six columns. The first five columns save all five-SNP combinations, and the last column saves their corresponding effects. Descending save according to their interaction effects. |

Junliang Shang [email protected]

None

1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 | ```
data(pts)
data(class)
MaxOrder <- 2
measure <- 1
SaveFileName <- ""
# Search Strategies
Effect <- ExhaustiveSearch(pts,class,MaxOrder,measure,0)
SingleEffect <- Effect$SingleEffect
TwoEffect <- Effect$TwoEffect
ThreeEffect <- Effect$ThreeEffect
FourEffect <- Effect$FourEffect
FiveEffect <- Effect$FiveEffect
# Normalization
Effect <- NormalizationEffect(MaxOrder,SingleEffect,TwoEffect,ThreeEffect,FourEffect
,FiveEffect,SaveFileName)
SingleEffect <- Effect$SingleEffect
TwoEffect <- Effect$TwoEffect
ThreeEffect <- Effect$ThreeEffect
FourEffect <- Effect$FourEffect
FiveEffect <- Effect$FiveEffect
``` |

CINOEDV documentation built on May 29, 2017, 9:07 p.m.

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