InputData: Input data

In CINOEDV: Co-Information based N-Order Epistasis Detector and Visualizer

Description

Input SNP data from a file with (.mat) format.

Usage

InputData(FileName)

Arguments

FileName

character. The file name with its format (.mat) that saves SNP data. It has two variables, i.e., pts and class. For pts, Row -> Sample, Column -> SNP, 1 -> AA, 2 -> Aa, 3 -> aa. For class, Row -> 1, Column -> class label, 1 -> case, 2-> control.

Value

pts	matrix. Each row represents a sample. Each column represents a SNP. For the element, 1 -> AA, 2 -> Aa, 3 -> aa.
class	matrix. It only has one row. Each column represents a class label. For the element, 1 -> case, 2-> control.

Author(s)

Junliang Shang [e-mail]

References

None

Examples

# The files (test.mat) should be downloaded from http://sourceforge.net/projects/cinoedv/files/.

FileName <- system.file("extdata","test.mat",package="CINOEDV")
Data <- InputData(FileName)
pts <- Data$pts
class <- Data$class

CINOEDV documentation built on May 29, 2017, 9:07 p.m.

Heatmap function

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