Co-Information Computation

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Description

This function compute co-information value of a given SNP combination.

Usage

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Arguments

pts

matrix. SNP data. Each row represents a sample. Each column represents a SNP. For the element, 1 -> AA, 2 -> Aa, 3 -> aa.

class

matrix. Class labels of samples. It only has one row. Each column represents a class label. For the element, 1 -> case, 2-> control.

factor

numeric. The considered SNP or SNP-combination. For example, factor <- 5, or factor <- c(2,5)

Value

Co_Information_Value: matrix. co-information value of a give SNP combination.

Author(s)

Junliang Shang shangjunliang110@163.com

References

None

Examples

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data(pts)
data(class)
factor <- c(2,5)
V <- CoInformation(pts, class, factor)
Co_Information_Value <- V$Co_Information_Value

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