CoInformation: Co-Information Computation

In CINOEDV: Co-Information based N-Order Epistasis Detector and Visualizer

Description

This function compute co-information value of a given SNP combination.

Usage

CoInformation(pts, class, factor)

Arguments

pts	matrix. SNP data. Each row represents a sample. Each column represents a SNP. For the element, 1 -> AA, 2 -> Aa, 3 -> aa.
class	matrix. Class labels of samples. It only has one row. Each column represents a class label. For the element, 1 -> case, 2-> control.
factor	numeric. The considered SNP or SNP-combination. For example, factor <- 5, or factor <- c(2,5)

Value

Co_Information_Value: matrix. co-information value of a give SNP combination.

Author(s)

Junliang Shang [e-mail]

References

None

Examples

data(pts)
data(class)
factor <- c(2,5)
V <- CoInformation(pts, class, factor)
Co_Information_Value <- V$Co_Information_Value

CINOEDV documentation built on May 29, 2017, 9:07 p.m.