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# Entry point called by optimx.
# Puts together all interlayers needed depending on the specified parameters
#
#
# Interlayers are put together depending on the parameters given.
# No additional input checks are performed on any given parameter
#
# @param ... All other arguments to be given to the LL function
#
# LL.params needs to be the first argument as it will receive the parameters from the optimizer
#' @importFrom utils modifyList
interlayer_manager <- function(LL.params, LL.param.names.to.optimx, LL.function.sum,
use.interlayer.constr,
use.interlayer.reg, reg.lambda.trans, reg.lambda.life,
use.cor,
...){
all.other.args <- list(...)
# Parameter names are removed by some optimization methods
# Add back because crucial for further interlayers
names(LL.params) <- LL.param.names.to.optimx
# Put together the interlayers -----------------------------------------------
# Depends on the parameters given
# Content: use interlayer
# NULL: dont use interlayer
#
# Interlayers will be called recursively, using the
# one on top (first position) as next.
#
# Last interlayer to call therefore always is _callLL()
#
# If some parameters are constraint, they need to be the very first,
# as this interlayer only generates the parameters which will then be
# used by the other interlayers
# if covs were constraint, the names for all params are needed per
# process in _callLL and regularization interlayer. These are generated
# here from the original cov data names
# Add callLL as first and append all other interlayers before that
# (callLL will be called as last)
interlayers.to.use <- list("callLL"=interlayer_callLL)
# Add correlation interlayer if needed
if(use.cor == T & !anyNA(use.cor))
interlayers.to.use <- c("correlation"=interlayer_correlation, interlayers.to.use)
# Add regularization interlayer if needed
if(use.interlayer.reg == T &
!is.null(reg.lambda.trans) & !anyNA(reg.lambda.trans) &
!is.null(reg.lambda.life) & !anyNA(reg.lambda.life)){
interlayers.to.use <- c("regularization"=interlayer_regularization, interlayers.to.use)
}
# Add constraint infront of all other interlayers, if needed
if(use.interlayer.constr == TRUE){
interlayers.to.use <- c("constraints"=interlayer_constraints, interlayers.to.use)
}
# Start calling the interlayers ----------------------------------------------
# Use do call to integrate ... args
interlayer.call.args <- list(next.interlayers = interlayers.to.use,
LL.function.sum = LL.function.sum,
LL.params = LL.params,
reg.lambda.life = reg.lambda.life,
reg.lambda.trans = reg.lambda.trans)
interlayer.call.args <- modifyList(interlayer.call.args,
all.other.args)
return(do.call(what = interlayer_callnextinterlayer, args = interlayer.call.args))
}
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