Files in CNVassoc

Association Analysis of CNV Data and Imputed SNPs

inst

inst/doc

inst/doc/CNVassoc_vignette.Rnw

inst/doc/CNVassoc_vignette.pdf

inst/doc/changelog.txt

inst/doc/CNVassoc_vignette.R

src

src/NRlogisticcov.c

src/Makevars

src/NRinterweibullcov.c

src/NRweibullcov.c

src/loglikinterweibullcov.c

src/sampleC.c

src/maxC.c

src/NRlogistic.c

src/logliklogistic.c

src/CNVassoc.h

src/loglikweibull.c

src/dqrls.f

src/NRweibull.c

src/outerC.c

src/logliklogisticcov.c

src/NRinterlogisticcov.c

src/NRinterlogistic.c

src/NRinterweibull.c

src/loglikinterweibull.c

src/loglikinterlogisticcov.c

src/init.c

src/loglikinterlogistic.c

src/loglikweibullcov.c

src/simcensrespC.c

NAMESPACE

R

R/plot.cnv.probabilities.R R/cnv.R R/logistic.fit.R R/logLike.weibull.R R/print.cnv.R R/mixture.R R/cnvBatches.R R/NRnorm.R R/getQualityScore.default.R R/print.anova.CNVassoc.R R/linear.fit.R R/EMpoisson.R R/logLik.survreg.R R/plot.cnv.intensities.R R/logLike.logistic.R R/logLik.CNVassoc.R R/signalPlot.R R/CNVassoc.R R/print.CNVtest.R R/plapply.R R/CNVtest.R R/simCNVdataPois.R R/NRlogistic.R R/NRpoisson.R R/getQualityScore.R R/EMWeibull.R R/hessianLogistic.R R/EMlogistic.R R/getPvalBH.R R/classCNV.R R/getProbs.cghCall.R R/fastCNVinter.R R/hessianPoisson.R R/simNormMixt.R R/print.QualityScore.R R/getProbsRegions.i.R R/logLike.norm.R R/fastCNVassoc.R R/simCNVdataWeibull.R R/plotSignal.R R/assocCNV.i.R R/simCNVdataCaseCon.R R/is.cnv.R R/matrix2vector.R R/is.quantitative.R R/multiCNVassoc.R R/EMnorm.R R/NRWeibull.R R/z[.cnv.R R/mix.R R/getProbsRegions.R R/getProbs.cnv.R R/simCNVdataBinary.R R/ifelsem.R R/plot.cnv.R R/logLike.poisson.R R/checkCNV.R R/hessianLinear.R R/subset.cnv.R R/vector2matrix.R R/hessianWeibull.R R/anova.CNVassoc.R R/print.CNVassoc.R R/cnvDefault.R R/translate.r R/firstlib.R R/poisson.fit.R R/EMmixt.R R/print.summary.CNVassoc.R R/simCNVdataNorm.R R/summary.CNVassoc.R R/weibull.fit.R R/getProbs.R R/getQualityScore.cnv.R

vignettes

vignettes/main_figure_new.pdf vignettes/main_fugure_Q.pdf

vignettes/CNVassoc_vignette.bib

vignettes/fig1.pdf

vignettes/CNVassoc_vignette.Rnw

MD5

build

build/vignette.rds

DESCRIPTION

man

man/getProbsRegions.Rd man/plotSignal.Rd man/simCNVdataWeibull.Rd man/simCNVdataPois.Rd man/simCNVdataNorm.Rd man/CNVassoc-internal.Rd man/getQualityScore.Rd man/fastCNVinter.Rd man/getPvalBH.Rd man/CNVtest.Rd man/simCNVdataCaseCon.Rd man/fastCNVassoc.Rd man/CNVassoc.Rd man/multiCNVassoc.Rd man/cnv.Rd man/getProbs.Rd man/simCNVdataBinary.Rd

CNVassoc documentation built on May 30, 2017, 12:50 a.m.