Files in ClassifyITS
Fungal Assignment Pipeline
MD5
NEWS.md
README.md
NAMESPACE
DESCRIPTION
R/Best_Assingment.R
R/pipeline_wrapper.R
R/QC.R
R/Consensus_taxonomy.R
R/Check_N.R
R/graphics.R
R/zzz.R
R/Easy_Assingments.R
inst/doc/ClassifyITS.Rmd
inst/doc/ClassifyITS.R
inst/doc/ClassifyITS.html
inst/extdata/example_FASTA.fasta
inst/extdata/AssignITS_example_cutoffs.csv
inst/extdata/potential_contamination.fasta
inst/extdata/example_BLAST.tsv
inst/extdata/taxonomy_cutoffs.csv
build/vignette.rds
vignettes/ClassifyITS.Rmd
man/check_N.Rd
man/write_initial_assignments.Rd
man/parse_taxonomy_cutoffs.Rd
man/plot_alignment_hist.Rd
man/consensus_taxonomy_assignment.Rd
man/best_hit_taxonomy_assignment.Rd
man/safe_rbind_list.Rd
man/save_taxonomy_graphics.Rd
man/easy_assignments.Rd
man/ensure_cols.Rd
man/load_and_check.Rd
man/ITS_assignment.Rd
man/trim_alignments.Rd
