easy_assignments: Easy taxonomy assignment for OTUs using BLAST QC output &...

In ClassifyITS: Fungal Assignment Pipeline

Easy taxonomy assignment for OTUs using BLAST QC output & phylum-specific thresholds.

Description

Easy taxonomy assignment for OTUs using BLAST QC output & phylum-specific thresholds.

Usage

easy_assignments(blast_filtered, cutoffs_file = NULL, default_cutoff = 98)

Arguments

blast_filtered	QC-filtered BLAST dataframe (with parsed taxonomy columns!)
cutoffs_file	Path to taxonomy cutoffs CSV file. If not supplied or invalid, attempts to locate the default file in the package.
default_cutoff	Default percent identity cutoff for species assignment (default: 98)

Value

List with assigned_otus_df and remaining_otus_df

ClassifyITS documentation built on April 9, 2026, 5:08 p.m.