plot_alignment_hist: Create and return alignment length histogram (ggplot object)

In ClassifyITS: Fungal Assignment Pipeline

Create and return alignment length histogram (ggplot object)

Description

Create and return alignment length histogram (ggplot object)

Usage

plot_alignment_hist(blast, rep_seqs, cutoff_fraction = 0.6)

Arguments

blast	BLAST data frame.
rep_seqs	Named list/character vector of DNA strings (from seqinr::read.fasta(as.string = TRUE)).
cutoff_fraction	Numeric; fraction of median alignment length for cutoff line. Default 0.6.

Value

A ggplot object.

ClassifyITS documentation built on April 9, 2026, 5:08 p.m.