load_and_check: Load and check BLAST results and rep-seq FASTA

In ClassifyITS: Fungal Assignment Pipeline

Load and check BLAST results and rep-seq FASTA

Description

Load and check BLAST results and rep-seq FASTA

Usage

load_and_check(blast_file, rep_fasta, taxonomy_col = "stitle", verbose = FALSE)

Arguments

blast_file	Path to BLAST results TSV file.
rep_fasta	Path to representative sequences FASTA file.
taxonomy_col	The column in BLAST file containing taxonomy strings (default "stitle").
verbose	Logical; if TRUE, emit progress messages. Default FALSE.

Value

List with BLAST dataframe (kingdom-filtered) and rep_seqs as a named list of DNA strings.

ClassifyITS documentation built on April 9, 2026, 5:08 p.m.