parse_taxonomy_cutoffs: Parse taxonomy cutoffs file
In ClassifyITS: Fungal Assignment Pipeline
View source: R/Best_Assingment.R
parse_taxonomy_cutoffs R Documentation
Parse taxonomy cutoffs file
Description
Reads and processes a taxonomy cutoffs CSV for assignment thresholds at various ranks.
Usage
parse_taxonomy_cutoffs(cutoffs_file = NULL)
Arguments
cutoffs_file
Path to a taxonomy cutoffs CSV file. If not supplied or invalid,
attempts to locate the default file in the package.
Value
A list with two elements: long, a data frame of parsed cutoffs, and
ranks, the vector of taxonomic ranks.
ClassifyITS documentation built on April 9, 2026, 5:08 p.m.
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View source: R/Best_Assingment.R
| parse_taxonomy_cutoffs | R Documentation |
Parse taxonomy cutoffs file
Description
Reads and processes a taxonomy cutoffs CSV for assignment thresholds at various ranks.
Usage
parse_taxonomy_cutoffs(cutoffs_file = NULL)
Arguments
cutoffs_file |
Path to a taxonomy cutoffs CSV file. If not supplied or invalid, attempts to locate the default file in the package. |
Value
A list with two elements: long, a data frame of parsed cutoffs, and
ranks, the vector of taxonomic ranks.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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