trim_alignments: Trim BLAST alignments by minimum length
In ClassifyITS: Fungal Assignment Pipeline
trim_alignments R Documentation
Trim BLAST alignments by minimum length
Description
Trim BLAST alignments by minimum length
Usage
trim_alignments(blast, rep_seqs, fraction = 0.6)
Arguments
blast
BLAST data frame.
rep_seqs
Named list/character vector of DNA strings (from seqinr::read.fasta(as.string = TRUE)).
fraction
Numeric; fraction of the median rep-seq length used as the cutoff. Default 0.6.
Value
Filtered BLAST data frame.
ClassifyITS documentation built on April 9, 2026, 5:08 p.m.
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| trim_alignments | R Documentation |
Trim BLAST alignments by minimum length
Description
Trim BLAST alignments by minimum length
Usage
trim_alignments(blast, rep_seqs, fraction = 0.6)
Arguments
blast |
BLAST data frame. |
rep_seqs |
Named list/character vector of DNA strings (from seqinr::read.fasta(as.string = TRUE)). |
fraction |
Numeric; fraction of the median rep-seq length used as the cutoff. Default 0.6. |
Value
Filtered BLAST data frame.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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