Files in CodelistGenerator

Identify Relevant Clinical Codes and Evaluate Their Use

NEWS.md README.md R/subsetOnRouteCategory.R R/CodelistFromCodelistWithDetails.R R/stratifyByDoseUnit.R R/CodelistGenerator-package.R R/codesFromConceptSet.R R/summariseUnmappedCodes.R R/documentation_helper.R R/getMappings.R R/runSearch.R R/reexports.R R/summariseOrphanCodes.R R/checks.R R/summariseCodeUse.R R/stratifyByConcept.R R/tableUnmappedCodes.R R/helperFunctions.R R/getCandidateCodes.R R/compareCodelists.R R/buildAchillesTables.R R/tableAchillesCodeUse.R R/getRoutes.R R/mockVocabRef.R R/subsetOnDomain.R R/codesInUse.R R/summariseAchillesCodeUse.R R/vocabUtilities.R R/getDoseUnit.R R/subsetOnDoseUnit.R R/drugCodes.R R/getICD10StandardCodes.R R/tableCodeUse.R R/stratifyByRoute.R inst/doc/a04b_icd_codes.R inst/doc/a07_RunCodelistDiagnostics.R inst/doc/a04_GenerateVocabularyBasedCodelist.Rmd inst/doc/a02_ExploreCDMvocabulary.Rmd inst/doc/a02_ExploreCDMvocabulary.R inst/doc/a01_GettingOmopCdmVocabularies.R inst/doc/a06_CreateSubsetsFromCodelist.R inst/doc/a03_GenerateCandidateCodelist.Rmd inst/doc/a07_RunCodelistDiagnostics.Rmd inst/doc/a06_CreateSubsetsFromCodelist.Rmd inst/doc/a01_GettingOmopCdmVocabularies.Rmd inst/doc/a05_ExtractCodelistFromJSONfile.Rmd inst/doc/a03_GenerateCandidateCodelist.R inst/doc/a05_ExtractCodelistFromJSONfile.R inst/doc/a04b_icd_codes.Rmd inst/doc/a04_GenerateVocabularyBasedCodelist.R tests/testthat.R tests/testthat/test-dbms.R tests/testthat/test-codesFrom.R tests/testthat/test-vocabUtilities.R tests/testthat/test-getDoseUnit.R tests/testthat/test-getMappings.R tests/testthat/test-mockVocabRef.R tests/testthat/test-synthea_sql_server.R tests/testthat/test-subsetOnDoseUnit.R tests/testthat/test-summariseUnmappedCodes.R tests/testthat/test-subsetOnRouteCategory.R tests/testthat/test-restrictToCodesInUse.R tests/testthat/test-stratifyByRouteCategory.R tests/testthat/test-tableCodeUse.R tests/testthat/test-codesInUse.R tests/testthat/test-summariseCodeUse.R tests/testthat/test-summariseAchillesCodeUse.R tests/testthat/test-data.R tests/testthat/test-stratifyByConcept.R tests/testthat/test-subsetOnDomain.R tests/testthat/test-helperFunctions.R tests/testthat/test-stratifyByDoseUnit.R tests/testthat/test-summariseOrphanCodes.R tests/testthat/test-tableUnmappedCodes.R tests/testthat/test-getCandidateCodes.R tests/testthat/test-compareCodelists.R tests/testthat/test-tidyWords.R tests/testthat/test-findUnmappedCodes.R tests/testthat/test-buildAchillesTables.R tests/testthat/test-getRouteCategories.R tests/testthat/setup.R tests/testthat/test-tableAchillesCodeUse.R tests/testthat/test-getICD10StandardCodes.R tests/testthat/test-drugCodes.R vignettes/a04_GenerateVocabularyBasedCodelist.Rmd vignettes/a02_ExploreCDMvocabulary.Rmd vignettes/a03_GenerateCandidateCodelist.Rmd vignettes/a07_RunCodelistDiagnostics.Rmd vignettes/a06_CreateSubsetsFromCodelist.Rmd vignettes/a01_GettingOmopCdmVocabularies.Rmd vignettes/a05_ExtractCodelistFromJSONfile.Rmd vignettes/a04b_icd_codes.Rmd man/standardConceptDoc.Rd man/summariseUnmappedCodes.Rd man/levelATCDoc.Rd man/tableCohortCodeUse.Rd man/tableCodeUse.Rd man/buildAchillesTables.Rd man/summariseCodeUse.Rd man/availableICD10.Rd man/getDomains.Rd man/getATCCodes.Rd man/headerDoc.Rd man/summariseAchillesCodeUse.Rd man/codesFromCohort.Rd man/reexports.Rd man/domainDoc.Rd man/bySexDoc.Rd man/availableATC.Rd man/byYearDoc.Rd man/getMappings.Rd man/doseFormDoc.Rd man/includeDescendantsDoc.Rd man/availableIngredients.Rd man/tableAchillesCodeUse.Rd man/hideDoc.Rd man/countByDoc.Rd man/stratifyByRouteCategory.Rd man/codesInUse.Rd man/nameStyleDoc.Rd man/subsetOnRouteCategory.Rd man/hideStrataDoc.Rd man/keepOriginalDoc.Rd man/typeNarrowDoc.Rd man/CodelistGenerator-package.Rd man/getCandidateCodes.Rd man/getDoseUnit.Rd man/getDescendants.Rd man/doseUnitDoc.Rd man/tableUnmappedCodes.Rd man/byConceptDoc.Rd man/routeCategoryDoc.Rd man/cdmDoc.Rd man/getDrugIngredientCodes.Rd man/minimumCountDoc.Rd man/groupColumnDoc.Rd man/tableDoc.Rd man/subsetOnDomain.Rd man/groupColumnStrataDoc.Rd man/subsetToCodesInUse.Rd man/tableOrphanCodes.Rd man/ingredientRangeDoc.Rd man/typeBroadDoc.Rd man/typeTableDoc.Rd man/mockVocabRef.Rd man/dot-optionsDoc.Rd man/getRouteCategories.Rd man/stratifyByConcept.Rd man/sourceCodesInUse.Rd man/stratifyByDoseUnit.Rd man/ageGroupDoc.Rd man/levelICD10Doc.Rd man/compareCodelists.Rd man/getConceptClassId.Rd man/getICD10StandardCodes.Rd man/summariseOrphanCodes.Rd man/xDoc.Rd man/subsetOnDoseUnit.Rd man/summariseCohortCodeUse.Rd man/headerStrataDoc.Rd man/getVocabularies.Rd man/codesFromConceptSet.Rd man/getDoseForm.Rd man/getVocabVersion.Rd man/getRelationshipId.Rd