Files in CodelistGenerator
Identify Relevant Clinical Codes and Evaluate Their Use
MD5
NEWS.md
README.md
NAMESPACE
DESCRIPTION
R/sysdata.rda
R/subsetOnRouteCategory.R
R/CodelistFromCodelistWithDetails.R
R/stratifyByDoseUnit.R
R/CodelistGenerator-package.R
R/utils-pipe.R
R/codesFromConceptSet.R
R/getMappings.R
R/runSearch.R
R/data.R
R/summariseOrphanCodes.R
R/checks.R
R/inputValidation.R
R/summariseCodeUse.R
R/stratifyByConcept.R
R/helperFunctions.R
R/getCandidateCodes.R
R/compareCodelists.R
R/tableAchillesCodeUse.R
R/findUnmappedCodes.R
R/getRoutes.R
R/mockVocabRef.R
R/codesInUse.R
R/summariseAchillesCodeUse.R
R/vocabUtilities.R
R/getDoseUnit.R
R/subsetOnDoseUnit.R
R/drugCodes.R
R/getICD10StandardCodes.R
R/tableCodeUse.R
R/stratifyByRoute.R
inst/optionsData05.RData
inst/optionsData03.RData
inst/optionsData04.RData
inst/optionsData02.RData
inst/optionsData06.RData
inst/introData05.RData
inst/introData01.RData
inst/optionsData07.RData
inst/medData01.RData
inst/medData02a.RData
inst/medData02b.RData
inst/medData03.RData
inst/introData02.RData
inst/optionsData01.RData
inst/introVocab.RData
inst/introData04.RData
inst/WORDLIST
inst/introData03.RData
inst/medDataDoseForms.RData
inst/medDataConceptClass.RData
inst/doc/a02_Candidate_codes_OA.html
inst/doc/a03_Options_for_CodelistGenerator.R
inst/doc/a04_Vocab_based_codelists.Rmd
inst/doc/a01_Introduction_to_CodelistGenerator.Rmd
inst/doc/a04_Vocab_based_codelists.R
inst/doc/a04_Vocab_based_codelists.html
inst/doc/a02_Candidate_codes_OA.R
inst/doc/a02_Candidate_codes_OA.Rmd
inst/doc/a03_Options_for_CodelistGenerator.html
inst/doc/a01_Introduction_to_CodelistGenerator.R
inst/doc/a03_Options_for_CodelistGenerator.Rmd
inst/doc/a01_Introduction_to_CodelistGenerator.html
inst/concepts_dbms/oa_desc.json
inst/concepts_dbms/oa_no_desc.json
inst/cohorts_for_mock_with_exclude/oa_desc.json
inst/concepts_for_mock/oa_desc.json
inst/concepts_for_mock/oa_no_desc.json
inst/cohorts2/deep_vein_thrombosis_01.json
inst/cohorts2/GIBleed_male.json
inst/cohorts2/cerebral_venous_sinus_thrombosis_01.json
inst/concepts_for_mock_with_mapped/oa_desc.json
inst/concepts_for_mock_with_mapped/oa_with_mapped.json
inst/cohorts/extra_file.txt
inst/cohorts/cohorts.json
inst/cohorts_for_mock/oa_desc.json
inst/cohorts_for_mock/oa_no_desc.json
inst/cohorts_for_mock_with_mapped/oa_desc.json
inst/cohorts_for_mock_with_mapped/oa_no_desc.json
inst/concepts/influenza.json
inst/concepts/extra_file.txt
inst/concepts/acetaminophen.json
inst/concepts_for_mock_with_exclude/oa_desc.json
inst/concepts_for_mock_with_exclude/oa_with_excluded2.json
inst/concepts_for_mock_with_exclude/oa_with_excluded.json
inst/cohorts_for_mock_dups/oa_desc.json
inst/cohorts_for_mock_dups/oa_no_desc.json
inst/not_all_concept_sets/influenza.json
inst/not_all_concept_sets/cohort_def.json
inst/not_all_concept_sets/acetaminophen.json
build/vignette.rds
tests/testthat.R
tests/testthat/test-dbms.R
tests/testthat/test-codesFrom.R
tests/testthat/test-vocabUtilities.R
tests/testthat/test-getDoseUnit.R
tests/testthat/test-getMappings.R
tests/testthat/test-mockVocabRef.R
tests/testthat/test-synthea_sql_server.R
tests/testthat/test-subsetOnDoseUnit.R
tests/testthat/test-subsetOnRouteCategory.R
tests/testthat/test-restrictToCodesInUse.R
tests/testthat/test-stratifyByRouteCategory.R
tests/testthat/test-tableCodeUse.R
tests/testthat/test-codesInUse.R
tests/testthat/test-summariseCodeUse.R
tests/testthat/test-summariseAchillesCodeUse.R
tests/testthat/test-data.R
tests/testthat/test-stratifyByConcept.R
tests/testthat/test-helperFunctions.R
tests/testthat/test-stratifyByDoseUnit.R
tests/testthat/test-summariseOrphanCodes.R
tests/testthat/test-getCandidateCodes.R
tests/testthat/test-compareCodelists.R
tests/testthat/test-tidyWords.R
tests/testthat/test-findUnmappedCodes.R
tests/testthat/test-getRouteCategories.R
tests/testthat/test-tableAchillesCodeUse.R
tests/testthat/test-getICD10StandardCodes.R
tests/testthat/test-drugCodes.R
vignettes/mock_db_fig4.png
vignettes/mock_db_fig2.png
vignettes/a04_Vocab_based_codelists.Rmd
vignettes/a01_Introduction_to_CodelistGenerator.Rmd
vignettes/mock_db_fig1.png
vignettes/mock_db_fig8.png
vignettes/mock_db_fig6.png
vignettes/a02_Candidate_codes_OA.Rmd
vignettes/mock_db_fig5.png
vignettes/mock_db_fig7.png
vignettes/a03_Options_for_CodelistGenerator.Rmd
vignettes/mock_db_fig3.png
data/doseFormToRoute.rda
man/tableCohortCodeUse.Rd
man/tableCodeUse.Rd
man/summariseCodeUse.Rd
man/availableICD10.Rd
man/getDomains.Rd
man/getATCCodes.Rd
man/summariseAchillesCodeUse.Rd
man/codesFromCohort.Rd
man/availableATC.Rd
man/doseFormToRoute.Rd
man/getMappings.Rd
man/availableIngredients.Rd
man/tableAchillesCodeUse.Rd
man/stratifyByRouteCategory.Rd
man/codesInUse.Rd
man/subsetOnRouteCategory.Rd
man/CodelistGenerator-package.Rd
man/getCandidateCodes.Rd
man/getDoseUnit.Rd
man/getDescendants.Rd
man/getDrugIngredientCodes.Rd
man/subsetToCodesInUse.Rd
man/tableOrphanCodes.Rd
man/pipe.Rd
man/mockVocabRef.Rd
man/getRouteCategories.Rd
man/stratifyByConcept.Rd
man/sourceCodesInUse.Rd
man/stratifyByDoseUnit.Rd
man/compareCodelists.Rd
man/getConceptClassId.Rd
man/getICD10StandardCodes.Rd
man/summariseOrphanCodes.Rd
man/subsetOnDoseUnit.Rd
man/summariseCohortCodeUse.Rd
man/restrictToCodesInUse.Rd
man/getVocabularies.Rd
man/codesFromConceptSet.Rd
man/getDoseForm.Rd
man/getVocabVersion.Rd
man/getRelationshipId.Rd
man/figures/logo.png
