Description Usage Arguments Details Value Author(s) Examples
Function to calculate sum of distance to k-nearest neighbors as an outlier score, based on a kd-tree
1 | KNN_SUM(dataset, k=5)
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dataset |
The dataset for which observations have a summed k-nearest neighbors distance returned |
k |
The number of k-nearest neighbors. k has to be smaller than the number of observations in dataset |
KNN_SUM computes the sum of distance to neighboring observations. A kd-tree is used for kNN computation, using the kNN() function from the 'dbscan' package. The KNN_SUM function is useful for outlier detection in clustering and other multidimensional domains.
A vector of summed distance for observations. The greater distance, the greater outlierness
Jacob H. Madsen
1 2 3 4 5 6 7 8 9 10 11 12 13 | # Create dataset and set an optional k
X <- iris[,1:4]
K <- 5
# Find outliers
outlier_score <- KNN_SUM(dataset=X, k=K)
# Sort and find index for most outlying observations
names(outlier_score) <- 1:nrow(X)
sort(outlier_score, decreasing = TRUE)
# Inspect the distribution of outlier scores
hist(outlier_score)
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