Man pages for DHARMa
Residual Diagnostics for Hierarchical (Multi-Level / Mixed) Regression Models
| benchmarkRuntime | Benchmark runtimes of several functions |
| checkDots | Check dot operator |
| checkModel | Check if the fitted model is supported by DHARMa |
| checkSimulations | Check simulated data |
| createData | Simulate test data |
| createDHARMa | Create a DHARMa object from hand-coded simulations or... |
| DHARMa | DHARMa - Residual Diagnostics for HierArchical (Multi-level /... |
| DHARMa.ecdf | Modified ECDF function |
| ensureDHARMa | Ensures that an object is of class DHARMa |
| ensurePredictor | Ensures the existence of a valid predictor to plot residuals... |
| getFitted | Get fitted / predicted values |
| getFixedEffects | Extract fixed effects of a supported model |
| getObservedResponse | Get model response |
| getPossibleModels | get possible models |
| getQuantile | calculate quantiles |
| getRandomState | Record and restore a random state |
| getRefit | Get model refit |
| getResiduals | Get model residuals |
| getSimulations | Get model simulations |
| hist.DHARMa | Histogram of DHARMa residuals |
| hurricanes | Hurricanes |
| outliers | Return outliers |
| plotConventionalResiduals | Conventional residual plot |
| plot.DHARMa | DHARMa standard residual plots |
| plot.DHARMaBenchmark | Plots DHARMa benchmarks |
| plotQQunif | Quantile-quantile plot for a uniform distribution |
| plotResiduals | Generic res ~ pred scatter plot with spline or quantile... |
| plotSimulatedResiduals | DHARMa standard residual plots |
| print.DHARMa | Print simulated residuals |
| recalculateResiduals | Recalculate residuals with grouping |
| residuals.DHARMa | Return residuals of a DHARMa simulation |
| runBenchmarks | Benchmark calculations |
| simulateLRT | Simulated likelihood ratio tests for (generalized) linear... |
| simulateResiduals | Create simulated residuals |
| testCategorical | Test for categorical dependencies |
| testDispersion | DHARMa dispersion tests |
| testGeneric | Generic simulation test of a summary statistic |
| testOutliers | Test for outliers |
| testOverdispersion | Simulated overdisperstion tests |
| testOverdispersionParametric | Parametric overdisperstion tests |
| testPDistribution | Plot distribution of p-values |
| testQuantiles | Test for quantiles |
| testResiduals | DHARMa general residual test |
| testSimulatedResiduals | Residual tests |
| testSpatialAutocorrelation | Test for distance-based (spatial, phylogenetic or similar)... |
| testTemporalAutocorrelation | Test for temporal autocorrelation |
| testUniformity | Test for overall uniformity |
| testZeroInflation | Tests for zero-inflation |
| transformQuantiles | Transform quantiles to pdf (deprecated) |
