Description Usage Arguments Details Value References See Also Examples
This function calculates log likelihood ratio value.
1 | likelihood(thetast, fobs, merge2)
|
thetast |
a starting values for the parameter we need to estimate |
fobs |
the 4^K joint distribution array for K edge tree |
merge2 |
a (K-1) x 2 matrix describing the tree topology |
This function calculates the log likelihood ratio value for F(t). It needs a vector of starting values for the parameters estimate, 4^K observed divergence array and merge matrix describing the tree topology.
The value of the log likelihood ratio
Faisal Ababneh, Lars S Jermiin, Chunsheng Ma, John Robinson (2006). Matched-pairs tests of homogeneity with applications to homologous nucleotide sequences. Bioinformatics, 22(10), 1225-1231.
gn, gn2
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[1] 0
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