Description Usage Arguments Details Value References See Also Examples

This function generates random DNA samples using an approximation method

1 | ```
simapp(theta, seqLength, merge1)
``` |

`theta` |
a vector of variables containing the following parameters in this order–1. the first three parameters from |

`seqLength` |
the length of sequences we need to generate |

`merge1` |
(K-1) x 2 matrix describing the tree topology |

This function generates a *4^K* DNA array using an approximation method. It depends on a set of variables theta, the sequence length and a merge matrix describing the tree topology.

A n x K observed divergence matrix

Faisal Ababneh, Lars S Jermiin, Chunsheng Ma, John Robinson (2006). Matched-pairs tests of homogeneity with applications to homologous nucleotide sequences. Bioinformatics, 22(10), 1225-1231.

Ntml, simemb, gn3sim, gn, gn2, Fmatrix

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