stat_median_iqr_text: Add Text Indicating the Median and Interquartile Range to a...

In EnvStats: Package for Environmental Statistics, Including US EPA Guidance

Add Text Indicating the Median and Interquartile Range to a ggplot2 Plot

Description

For a strip plot or scatterplot produced using the package ggplot2 (e.g., with geom_point), for each value on the x-axis, add text indicating the median and interquartile range (IQR) of the y-values for that particular x-value.

Usage

  stat_median_iqr_text(mapping = NULL, data = NULL, 
    geom = ifelse(text.box, "label", "text"), 
    position = "identity", na.rm = FALSE, show.legend = NA, 
    inherit.aes = TRUE, y.pos = NULL, y.expand.factor = 0.2, 
    digits = 1, digit.type = "round", 
    nsmall = ifelse(digit.type == "round", digits, 0), text.box = FALSE, 
    alpha = 1, angle = 0, color = "black", family = "", fontface = "plain", 
    hjust = 0.5, label.padding = ggplot2::unit(0.25, "lines"), 
    label.r = ggplot2::unit(0.15, "lines"), label.size = 0.25, 
    lineheight = 1.2, size = 4, vjust = 0.5, ...)

Arguments

mapping, data, position, na.rm, show.legend, inherit.aes	See the help file for geom_text.
geom	Character string indicating which geom to use to display the text. Setting geom="text" will use geom_text to display the text, and setting geom="label" will use geom_label to display the text. The default value is geom="text" unless the user sets text.box=TRUE.
y.pos	Numeric scalar indicating the y-position of the text (i.e., the value of the argument y that will be used in the call to geom_text or geom_label). The default value is y.pos=NULL, in which case y.pos is set to the maximum value of all y-values plus a proportion of the range of all y-values, where the proportion is determined by the argument y.expand.factor (see below).
y.expand.factor	For the case when y.pos=NULL, a numeric scalar indicating the proportion by which the range of all y-values should be multiplied by before adding this value to the maximum value of all y-values in order to compute the value of the argument y.pos (see above). The default value is y.expand.factor=0.2.
digits	Integer indicating the number of digits to use for displaying the median and interquartile range. When digit.type="round" (see below) the argument digits indicates the number of digits to round to, and when digit.type="signif" the argument digits indicates the number of significant digits to display. The default value is digits=1.
digit.type	Character string indicating whether the digits argument (see above) refers to significant digits (digit.type="signif"), or how many decimal places to round to (digit.type="round", the default).
nsmall	Integer passed to the function format indicating the the minimum number of digits to the right of the decimal point for the computed median and interquartile range. The default value is nsmall=digits when digit.type="round" and nsmall=0 when digit.type="signif". When nsmall is greater than 0, all computed medians and interquartile ranges will have the same number of digits to the right of the decimal point (including, possibly, trailing zeros). To omit trailing zeros, set nsmall=0.
text.box	Logical scalar indicating whether to surround the text with a text box (i.e., whether to use geom_label instead of geom_text). This argument can be overridden by simply specifying the argument geom.
alpha, angle, color, family, fontface, hjust, vjust, lineheight, size	See the help file for geom_text and the vignette Aesthetic specifications at https://cran.r-project.org/package=ggplot2/vignettes/ggplot2-specs.html.
label.padding, label.r, label.size	See the help file for geom_text.
...	Other arguments passed on to layer.

Details

See the help file for geom_text for details about how geom_text and geom_label work.

See the vignette Extending ggplot2 at https://cran.r-project.org/package=ggplot2/vignettes/extending-ggplot2.html for information on how to create a new stat.

Note

The function stat_median_iqr_text is called by the function geom_stripchart.

Author(s)

Steven P. Millard ([e-mail])

References

Wickham, H. (2016). ggplot2: Elegant Graphics for Data Analysis (Use R!). Second Edition. Springer.

See Also

geom_stripchart, stat_mean_sd_text, stat_n_text, stat_test_text, geom_text, geom_label, median, iqr.

Examples

  # First, load and attach the ggplot2 package.
  #--------------------------------------------

  library(ggplot2)

  #====================

  # Example 1:

  # Using the built-in data frame mtcars, 
  # plot miles per gallon vs. number of cylinders
  # using different colors for each level of the number of cylinders.
  #------------------------------------------------------------------

  p <- ggplot(mtcars, aes(x = factor(cyl), y = mpg, color = factor(cyl))) + 
    theme(legend.position = "none")

  p + geom_point() + 
    labs(x = "Number of Cylinders", y = "Miles per Gallon")


  # Now add text indicating the median and interquartile range 
  # for each level of cylinder.
  #-----------------------------------------------------------

  dev.new()
  p + geom_point() + 
    stat_median_iqr_text() + 
    labs(x = "Number of Cylinders", y = "Miles per Gallon")
  
  #====================

  # Example 2:

  # Repeat Example 1, but:
  # 1) facet by transmission type, 
  # 2) make the size of the text smaller.
  #--------------------------------------

  dev.new()
  p + geom_point() + 
    stat_median_iqr_text(size = 2.75) + 
    facet_wrap(~ am, labeller = label_both) +  
    labs(x = "Number of Cylinders", y = "Miles per Gallon")
 
  #====================

  # Example 3:

  # Repeat Example 1, but specify the y-position for the text.
  #-----------------------------------------------------------

  dev.new()
  p + geom_point() + 
    stat_median_iqr_text(y.pos = 36) + 
    labs(x = "Number of Cylinders", y = "Miles per Gallon")


  #====================

  # Example 4:

  # Repeat Example 1, but show the 
  # median and interquartile range in a text box.
  #----------------------------------------------

  dev.new()
  p + geom_point() + 
    stat_median_iqr_text(text.box = TRUE) + 
    labs(x = "Number of Cylinders", y = "Miles per Gallon")
  
  #====================

  # Example 5:

  # Repeat Example 1, but use the color brown for the text.
  #--------------------------------------------------------
 
  dev.new()
  p + geom_point() + 
    stat_median_iqr_text(color = "brown") + 
    labs(x = "Number of Cylinders", y = "Miles per Gallon")

  #====================

  # Example 6:

  # Repeat Example 1, but:
  # 1) use the same colors for the text that are used for each group, 
  # 2) use the bold monospaced font.
  #------------------------------------------------------------------
 
  mat <- ggplot_build(p)$data[[1]]
  group <- mat[, "group"]
  colors <- mat[match(1:max(group), group), "colour"]

  dev.new()
  p + geom_point() + 
    stat_median_iqr_text(color = colors,  
      family = "mono", fontface = "bold") + 
    labs(x = "Number of Cylinders", y = "Miles per Gallon")
 
  #====================

  # Clean up
  #---------

  graphics.off()
  rm(p, mat, group, colors)

EnvStats documentation built on Sept. 11, 2024, 6:03 p.m.