Files in EpiModel

Mathematical Modeling of Infectious Disease Dynamics

NEWS.md R/net.fn.modules.R R/RcppExports.R R/modules.icm.R R/as.data.frame.R R/net.mod.recovery.R R/icm.mod.init.R R/plot.netdx.R R/get.R R/dcm.inputs.R R/netdx.R R/net.record.R R/dcm.R R/net.scenarios.R R/print.R R/icm.utils.R R/summary.R R/net.mod.prevalence.R R/shiny.R R/EpiModel-package.R R/param_df.R R/plot_stat_table.R R/comp_plot.R R/plot.dcm.R R/saveout.R R/net.inputs.R R/icm.mod.vital.R R/dendo.R R/plot.epi.data.frame.R R/net.mod.nwupdate.R R/verbose.R R/edgelists.R R/net.accessor.R R/net.helpers.R R/merge.R R/net.mod.trackers.R R/icm.R R/plot.R R/update.R R/reachable.R R/icm.inputs.R R/icm.mod.status.R R/net.utils.R R/dcm.mods.R R/network.R R/modules.net.R R/geom_bands.R R/net.end.horizon.R R/net.mod.updater.R R/plot.netsim.R R/netsim_checkpoint.R R/net.mod.infection.R R/net.mod.summary.R R/net.mod.vital.R R/ErgmTerms.R R/plot.icm.R R/netsim.R R/net.mod.init.R R/netest.R R/utils.R R/test.R R/net.mod.simnet.R inst/doc/network-objects.Rmd inst/doc/Intro.Rmd inst/doc/model-parameters.Rmd inst/doc/model-parameters.R inst/doc/Intro.R inst/doc/network-objects.R inst/doc/attributes-and-summary-statistics.Rmd inst/doc/attributes-and-summary-statistics.R inst/shiny/epidcm/ui.R inst/shiny/epidcm/server.R inst/shiny/epiicm/ui.R inst/shiny/epiicm/server.R inst/shiny/epinet/ui.R inst/shiny/epinet/server.R inst/web/BasicICMs.R inst/web/NewDCMs.R inst/web/NewDCMs.Rmd inst/web/BasicDCMs.Rmd inst/web/BasicDCMs.R inst/web/BasicICMs.Rmd tests/test-all.R tests/testthat/test-attr-copy.R tests/testthat/test-networkLite.R tests/testthat/test-multinets.R tests/testthat/test-scenarios.R tests/testthat/test-update.R tests/testthat/test-dissolution-diagnostics.R tests/testthat/test-net-long.R tests/testthat/test-parameters_df.R tests/testthat/test-transmat-dendo.R tests/testthat/test-netsim.R tests/testthat/test-dcm.R tests/testthat/test-updater.R tests/testthat/test-netoffset.R tests/testthat/test-extremal-targets.R tests/testthat/test-newmodules.R tests/testthat/test-utils.R tests/testthat/test-netsim-end-horizon.R tests/testthat/test-newicm.R tests/testthat/test-dcm-long.R tests/testthat/test-trackers.R tests/testthat/test-record.R tests/testthat/test-random-params.R tests/testthat/test-netsim-checkpoint.R tests/testthat/test-ergm.ego.R tests/testthat/test-netattr.R tests/testthat/test-dcm-dede.R tests/testthat/test-netest.R tests/testthat/test-icm.R tests/testthat/test-netdx.R tests/testthat/test-get.R tests/testthat/test-term-fuzzynodematch.R tests/testthat/test-terms.R tests/testthat/test-newdcm.R tests/testthat/test-mutate.R tests/testthat/test-netrestart.R tests/testthat/Rplots.pdf tests/testthat/test-netsim-parallel.R tests/testthat/test-cumulative_edgelist.R tests/testthat/test-merge.R tests/testthat/test-net-tergmLite.R tests/testthat/test-icm-long.R tests/testthat/test-netvary.R tests/testthat/test-stergm.R tests/testthat/test-print.R tests/testthat/test-shiny.R tests/testthat/test-netstats.R tests/testthat/test-trim_netest.R tests/testthat/test-accessors.R vignettes/network-objects.Rmd vignettes/Intro.Rmd vignettes/model-parameters.Rmd vignettes/attributes-and-summary-statistics.Rmd man/infection.2g.net.Rd man/mutate_epi.Rd man/as_cumulative_edgelist.Rd man/get_cumulative_edgelist.Rd man/record_raw_object.Rd man/get_network_attributes.Rd man/netsim_error_logger.Rd man/plot.netsim.Rd man/check_attr_lengths.Rd man/dedup_cumulative_edgelist.Rd man/InitErgmTerm.fuzzynodematch.Rd man/test_icm.Rd man/plot.dcm.Rd man/arrivals.icm.bip.Rd man/get_discordant_edgelist.Rd man/summary.icm.Rd man/departures.2g.net.Rd man/print_nwstats_table.Rd man/delete_attr.Rd man/get_args.Rd man/update_dissolution.Rd man/unique_id-tools.Rd man/plot.transmat.Rd man/InitErgmTerm.absdiffnodemix.Rd man/auto_update_attr.Rd man/verbose.icm.Rd man/dcm.mods.Rd man/initialize.net.Rd man/prevalence.icm.Rd man/arrivals.net.Rd man/toggles_to_diss_stats.Rd man/get_transmat.Rd man/get_subnet_adj_list.Rd man/control.net.Rd man/get_cumulative_degree.Rd man/get_formula_term_attr.Rd man/delete_vertices.Rd man/netdx.Rd man/get_adj_list.Rd man/overwrite_attrs.Rd man/set_network.Rd man/update_params.Rd man/arrive_nodes.Rd man/modules.icm.Rd man/init.net.Rd man/infection.icm.bip.Rd man/discord_edgelist.Rd man/mcat.Rd man/InitErgmTerm.absdiffby.Rd man/dissolution_coefs.Rd man/geom_bands.Rd man/get_nwstats.Rd man/tedgelist_to_toggles.Rd man/recovery.net.Rd man/param.dcm.Rd man/netsim_cond_msg.Rd man/update_unique_ids.Rd man/increment_timestep.Rd man/get_attr_history.Rd man/verbose.dcm.Rd man/summary.dcm.Rd man/create_scenario_list.Rd man/init_status.net.Rd man/remove_modules.Rd man/is_active_posit_ids.Rd man/network_initialize.Rd man/crosscheck.dcm.Rd man/modules.net.Rd man/set_modules.Rd man/get_degree.Rd man/create_dat_object.Rd man/idgroup.Rd man/use_scenario.Rd man/get_cumulative_edgelists_df.Rd man/netest.Rd man/reachable-nodes.Rd man/resim_nets.Rd man/get_edgelist.Rd man/nwupdate.net.Rd man/dcm.Rd man/init_nets.Rd man/check_end_horizon_control.Rd man/as.data.frame.icm.Rd man/infection.icm.Rd man/as.epi.data.frame.Rd man/make_stats_table.Rd man/param.net_from_table.Rd man/get_attr_prop.Rd man/edgelist_censor.Rd man/multilayer.Rd man/prevalence.icm.bip.Rd man/arrivals.icm.Rd man/as.network.transmat.Rd man/sim_nets_t1.Rd man/recovery.icm.Rd man/trim_netest.Rd man/summary.netsim.Rd man/get_param_set.Rd man/icm.Rd man/truncate_sim.Rd man/param.icm.Rd man/arrivals.2g.net.Rd man/format_param.Rd man/verbose.net.Rd man/comp_plot.Rd man/crosscheck.net.Rd man/is_active_unique_ids.Rd man/init.dcm.Rd man/get_edgelists_df.Rd man/as.data.frame.netdx.Rd man/add_vertices.Rd man/check_degdist_bal.Rd man/set_vertex_attribute.Rd man/departures.net.Rd man/get_current_timestep.Rd man/EpiModel-package.Rd man/simulate_dat.Rd man/merge.icm.Rd man/as_tibble_edgelist.Rd man/net-accessor.Rd man/merge.netsim.Rd man/plot.epi.data.frame.Rd man/padded_vector.Rd man/departures.icm.bip.Rd man/print.netdx.Rd man/update_list.Rd man/summary_nets.Rd man/get_sims.Rd man/as.data.frame.dcm.Rd man/color_tea.Rd man/departures.icm.Rd man/control.icm.Rd man/init.icm.Rd man/edges_correct.Rd man/netsim.Rd man/prevalence.net.Rd man/epi_trackers.Rd man/make_module_list.Rd man/init_status.icm.Rd man/get_partners.Rd man/get_modules.Rd man/brewer_ramp.Rd man/saveout.icm.Rd man/trigger_end_horizon.Rd man/initialize.icm.Rd man/generate_random_params.Rd man/get_network.Rd man/get_nwparam.Rd man/param.net_to_table.Rd man/control.dcm.Rd man/recovery.2g.net.Rd man/ssample.Rd man/depart_nodes.Rd man/set_transmat.Rd man/param_random.Rd man/common_updater.Rd man/update_cumulative_edgelist.Rd man/apportion_lr.Rd man/delete_edges.Rd man/epiweb.Rd man/infection.net.Rd man/crosscheck.icm.Rd man/get_vertex_attribute.Rd man/as.phylo.transmat.Rd man/record_attr_history.Rd man/get_network_term_attr.Rd man/plot.icm.Rd man/process_out.net.Rd man/recovery.icm.bip.Rd man/copy_datattr_to_nwattr.Rd man/get_connected_nodes.Rd man/plot.netdx.Rd man/saveout.dcm.Rd man/summary.netest.Rd man/copy_nwattr_to_datattr.Rd man/param.net.Rd man/saveout.net.Rd man/set_current_timestep.Rd man/test_net.Rd