mirnapredata: Base frequency distribution of small RNA (sRNA)

In ExpGenetic: Non-Additive Expression Analysis of Hybrid Offspring

Base frequency distribution of small RNA (sRNA)

Description

Get the base frequency distribution table.

Usage

mirnapredata(sRNAseq)

Arguments

sRNAseq

Character. All sRNA sequences in vector format.

Value

A data frame. The output consists of three columns, i.e., base, base frequency and position.

Examples

#F1
F1_miRNA <- F1_miRNA_count[,1]
F1_bf <- mirnapredata(sRNAseq = F1_miRNA)
#output result
head(F1_bf)
#  Base Frequency Position
#1    A        32        1
#2    C        27        1
#3    G        31        1
#4    T       115        1
#5    A        27        2
#6    C        50        2

ExpGenetic documentation built on Sept. 9, 2022, 9:06 a.m.