srnapredata: Length distribution of small RNAs (sRNAs)

In ExpGenetic: Non-Additive Expression Analysis of Hybrid Offspring

Length distribution of small RNAs (sRNAs)

Description

Get the length distribution of sRNAs.

Usage

srnapredata(sRNAseq, Group)

Arguments

sRNAseq	Character. All sRNA sequences in vector format.
Group	Character. Group name.

Value

A data frame. The output consists of three columns, i.e., length, frequency and group name.

Examples

#P1(B.napus)
B.napu_sRNA <- srnapredata(sRNAseq = P1_sRNA_seq, Group = "B.napus(AACC)")
#P2(B.rapa)
B.rapa_sRNA <- srnapredata(sRNAseq = P2_sRNA_seq, Group = "B.rapa(AA)")
#F1(B.napus X B.rapa)
B.nr_sRNA <- srnapredata(sRNAseq = F1_sRNA_seq, Group = "B.napus x B.rapa(AAAACC)")
#intergrate these data for length distribution plot
sRNA_data <- rbind(B.napu_sRNA, B.rapa_sRNA, B.nr_sRNA)
#output result
head(sRNA_data)
#  Length Frequency         Group
#1     15         8 B.napus(AACC)
#2     16         7 B.napus(AACC)
#3     17        13 B.napus(AACC)
#4     18        16 B.napus(AACC)
#5     19        25 B.napus(AACC)
#6     20        33 B.napus(AACC)

ExpGenetic documentation built on Sept. 9, 2022, 9:06 a.m.