Files in HLAtools

Toolkit for HLA Immunogenomics

NEWS.md README.md R/GLupdater.R R/checkgDNAStart.R R/atlasFull.R R/BDtoPyPop.R R/motifMatch.R R/AlleleTrim.R R/buildAlignments.R R/buildGazeteer.R R/compareSequences.R R/data.R R/accessoryFunctions.R R/extractGeneTypes.R R/SearchandBuildAlignments.R R/alignmentFull.R R/UpdateAll.R R/atlasMaker.R R/BDstrat.R R/relRisk.R R/GLStoUNI.R R/locusValidator.R R/VersionValidation.R R/globals.R R/BuildAlleleListHistory.R R/ThirdPartyFunctions.R R/fragmentFeatureNames.R R/UNItoGLS.R R/GIANT.R inst/doc/HLAtools.Rmd inst/doc/HLAtools.R vignettes/HLAtools.Rmd man/parseAlignmentHead.Rd man/multiAlleleTrim.Rd man/updateAll.Rd man/GLvalidate.Rd man/alleleTrim.Rd man/compareSequences.Rd man/validateLocus.Rd man/UNtoGL.Rd man/GLtoUN.Rd man/getLatestVersion.Rd man/numFields.Rd man/updateGL.Rd man/IMGTHLAGeneTypes.Rd man/validateAllele.Rd man/GLVhelper.Rd man/UNIFORMAT.example.Rd man/updateAlleleListHistory.Rd man/checkAlignType.Rd man/alleleListHistory.Rd man/variantTable.Rd man/validateGLstring.Rd man/expandVersion.Rd man/UNItoGLS.Rd man/redec.Rd man/BDstrat.Rd man/convertAny.Rd man/GLstring.ex.Rd man/fragmentFeatureNames.Rd man/BDtoPyPop.Rd man/GLSC.ex.Rd man/translateAllele.Rd man/buildGazeteer.Rd man/ffN.Rd man/uniSearch.Rd man/GLV2.Rd man/atlasMaker.Rd man/queryPositions.Rd man/multiTranslateGLstring.Rd man/multiAlign.Rd man/multiUNItoGLS.Rd man/formatHead.Rd man/countSpaces.Rd man/addCodonLine.Rd man/checkSource.Rd man/motifMatch.Rd man/customAlign.Rd man/validatePositions.Rd man/multiUpdateGL.Rd man/HLAatlas.Rd man/sHLAdata.Rd man/buildIMGTHLAGeneTypes.Rd man/HLAgazeteer.Rd man/uniAlign.Rd man/queryRelease.Rd man/repoVersion.Rd man/GIANT.Rd man/GLupdate.Rd man/multiSearch.Rd man/validateVersion.Rd man/verifyAllele.Rd man/getField.Rd man/checkVersion.Rd man/translateGLstring.Rd man/pypopHeaders.Rd man/checkgDNAstart.Rd man/multiLocusValidation.Rd man/relRisk.Rd man/validateUniformat.Rd man/multiQueryRelease.Rd man/alignmentSearch.Rd man/buildAlignments.Rd man/validateMotif.Rd man/GLV.Rd man/alignmentFull.Rd man/squashVersion.Rd man/multiGLStoUNI.Rd man/getAlignmentNames.Rd man/typeToSource.Rd man/posSort.Rd man/atlasFull.Rd man/GLStoUNI.Rd