HapEstXXR: Multi-Locus Stepwise Regression

The multi-locus stepwise regression (MSR) combines the advantages of stepwise regression and haplotype-based analysis. The MSR can be used to identify informative combinations of single nucleotide polymorphisms (SNPs) from unlinked SNPs (allele combinations) or SNPs within a chromosomal region (haplotypes).

AuthorSven Knueppel and Klaus Rohde
Date of publication2015-06-02 16:36:52
MaintainerSven Knueppel <sven.knueppel@dife.de>
LicenseLGPL (>= 2.1)
Version0.1-8

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Files in this package

HapEstXXR
HapEstXXR/src
HapEstXXR/src/matrix.c
HapEstXXR/src/exist_pattern.c
HapEstXXR/src/messageR.h
HapEstXXR/src/powerset.c
HapEstXXR/src/itegeppXXR.c
HapEstXXR/src/readin.h
HapEstXXR/src/message.c
HapEstXXR/src/nrutil.h
HapEstXXR/src/rng.c
HapEstXXR/src/message.h
HapEstXXR/src/matalloc.c
HapEstXXR/src/longhap.h
HapEstXXR/src/quicksort.c
HapEstXXR/src/bool.h
HapEstXXR/src/readin.c
HapEstXXR/src/quicksort.h
HapEstXXR/src/create_pattern_matrix.c
HapEstXXR/src/matalloc.h
HapEstXXR/src/i_quicksort.c
HapEstXXR/src/fundamental.h
HapEstXXR/src/rng.h
HapEstXXR/src/haptdpnZR.c
HapEstXXR/src/matrix.h
HapEstXXR/src/HapRshort.c
HapEstXXR/NAMESPACE
HapEstXXR/R
HapEstXXR/R/msr.R HapEstXXR/R/single.snp.test.casecohort.prentice.R HapEstXXR/R/allele2toR.R HapEstXXR/R/alleleRto2.R HapEstXXR/R/single.snp.test.binomial.R HapEstXXR/R/allele2to1.R HapEstXXR/R/hapest.caco.R HapEstXXR/R/catt.R HapEstXXR/R/itegeppXXR.R HapEstXXR/R/msr.gaussian.haplotype.test.adjusted.R HapEstXXR/R/msr.binomial.haplotype.test.unadjusted.R HapEstXXR/R/allele1toR.R HapEstXXR/R/single.snp.test.families.R HapEstXXR/R/makePlinkInputFile.R HapEstXXR/R/powerset.R HapEstXXR/R/msr.families.unadjusted.R HapEstXXR/R/msr.binomial.forward.adjusted.R HapEstXXR/R/multi.snp.test.R HapEstXXR/R/msr.gaussian.forward.unadjusted.R HapEstXXR/R/read.haploview.R HapEstXXR/R/msr.binomial.haplotype.test.adjusted.R HapEstXXR/R/coding.baseline.allele.R HapEstXXR/R/order.families.R HapEstXXR/R/single.haplotype.test.R HapEstXXR/R/hapest.gaussian.R HapEstXXR/R/msr.binomial.forward.unadjusted.R HapEstXXR/R/msr.gaussian.forward.adjusted.R HapEstXXR/R/msr.gaussian.haplotype.test.unadjusted.R HapEstXXR/R/makeHaploviewInputFile.R HapEstXXR/R/single.haplotype.test.gaussian.R
HapEstXXR/R/zzz.r
HapEstXXR/R/alleleRto1.R HapEstXXR/R/single.snp.test.casecohort.R HapEstXXR/R/single.haplotype.test.binomial.R HapEstXXR/R/dec2bin.R HapEstXXR/R/allele1to2.R HapEstXXR/R/single.snp.test.R HapEstXXR/R/maf.R HapEstXXR/R/read.data.R HapEstXXR/R/single.snp.test.gaussian.R HapEstXXR/R/single.haplotype.test.families.R
HapEstXXR/MD5
HapEstXXR/DESCRIPTION
HapEstXXR/man
HapEstXXR/man/powerset.Rd HapEstXXR/man/single.snp.test.Rd HapEstXXR/man/HapEstXXR-package.Rd HapEstXXR/man/multi.snp.test.Rd HapEstXXR/man/makeHaploviewInputFile.Rd HapEstXXR/man/single.haplotype.test.Rd HapEstXXR/man/msr.Rd HapEstXXR/man/makePlinkInputFile.Rd HapEstXXR/man/coding.baseline.allele.Rd HapEstXXR/man/allele1to2.Rd HapEstXXR/man/order.families.Rd HapEstXXR/man/read.data.Rd HapEstXXR/man/maf.Rd HapEstXXR/man/read.haploview.Rd HapEstXXR/man/dec2bin.Rd HapEstXXR/man/catt.Rd HapEstXXR/man/itegeppXXR.Rd

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