HapEstXXR: Multi-Locus Stepwise Regression

The multi-locus stepwise regression (MSR) combines the advantages of stepwise regression and haplotype-based analysis. The MSR can be used to identify informative combinations of single nucleotide polymorphisms (SNPs) from unlinked SNPs (allele combinations) or SNPs within a chromosomal region (haplotypes).

AuthorSven Knueppel and Klaus Rohde
Date of publication2015-06-02 16:36:52
MaintainerSven Knueppel <sven.knueppel@dife.de>
LicenseLGPL (>= 2.1)
Version0.1-8

View on CRAN

Functions

allele1to2 Man page
allele1toR Man page
allele2to1 Man page
allele2toR Man page
alleleRto1 Man page
alleleRto2 Man page
catt Man page
coding.baseline.allele Man page
dec2bin Man page
hapest.caco Man page
hapest.gaussian Man page
HapEstXXR Man page
HapEstXXR-package Man page
itegeppXXR Man page
maf Man page
makeHaploviewInputFile Man page
makePlinkInputFile Man page
msr Man page
msr.binomial.forward.adjusted Man page
msr.binomial.forward.unadjusted Man page
msr.binomial.haplotype.test.adjusted Man page
msr.binomial.haplotype.test.unadjusted Man page
msr.families.unadjusted Man page
msr.gaussian.forward.adjusted Man page
msr.gaussian.forward.unadjusted Man page
msr.gaussian.haplotype.test.adjusted Man page
msr.gaussian.haplotype.test.unadjusted Man page
multi.snp.test Man page
order.families Man page
powerset Man page
read.data Man page
read.haploview Man page
single.haplotype.test Man page
single.haplotype.test.binomial Man page
single.haplotype.test.families Man page
single.haplotype.test.gaussian Man page
single.haplotype.test.survival Man page
single.snp.test Man page
single.snp.test.binomial Man page
single.snp.test.casecohort Man page
single.snp.test.casecohort.prentice Man page
single.snp.test.families Man page
single.snp.test.gaussian Man page

Files

HapEstXXR
HapEstXXR/src
HapEstXXR/src/matrix.c
HapEstXXR/src/exist_pattern.c
HapEstXXR/src/messageR.h
HapEstXXR/src/powerset.c
HapEstXXR/src/itegeppXXR.c
HapEstXXR/src/readin.h
HapEstXXR/src/message.c
HapEstXXR/src/nrutil.h
HapEstXXR/src/rng.c
HapEstXXR/src/message.h
HapEstXXR/src/matalloc.c
HapEstXXR/src/longhap.h
HapEstXXR/src/quicksort.c
HapEstXXR/src/bool.h
HapEstXXR/src/readin.c
HapEstXXR/src/quicksort.h
HapEstXXR/src/create_pattern_matrix.c
HapEstXXR/src/matalloc.h
HapEstXXR/src/i_quicksort.c
HapEstXXR/src/fundamental.h
HapEstXXR/src/rng.h
HapEstXXR/src/haptdpnZR.c
HapEstXXR/src/matrix.h
HapEstXXR/src/HapRshort.c
HapEstXXR/NAMESPACE
HapEstXXR/R
HapEstXXR/R/msr.R HapEstXXR/R/single.snp.test.casecohort.prentice.R HapEstXXR/R/allele2toR.R HapEstXXR/R/alleleRto2.R HapEstXXR/R/single.snp.test.binomial.R HapEstXXR/R/allele2to1.R HapEstXXR/R/hapest.caco.R HapEstXXR/R/catt.R HapEstXXR/R/itegeppXXR.R HapEstXXR/R/msr.gaussian.haplotype.test.adjusted.R HapEstXXR/R/msr.binomial.haplotype.test.unadjusted.R HapEstXXR/R/allele1toR.R HapEstXXR/R/single.snp.test.families.R HapEstXXR/R/makePlinkInputFile.R HapEstXXR/R/powerset.R HapEstXXR/R/msr.families.unadjusted.R HapEstXXR/R/msr.binomial.forward.adjusted.R HapEstXXR/R/multi.snp.test.R HapEstXXR/R/msr.gaussian.forward.unadjusted.R HapEstXXR/R/read.haploview.R HapEstXXR/R/msr.binomial.haplotype.test.adjusted.R HapEstXXR/R/coding.baseline.allele.R HapEstXXR/R/order.families.R HapEstXXR/R/single.haplotype.test.R HapEstXXR/R/hapest.gaussian.R HapEstXXR/R/msr.binomial.forward.unadjusted.R HapEstXXR/R/msr.gaussian.forward.adjusted.R HapEstXXR/R/msr.gaussian.haplotype.test.unadjusted.R HapEstXXR/R/makeHaploviewInputFile.R HapEstXXR/R/single.haplotype.test.gaussian.R
HapEstXXR/R/zzz.r
HapEstXXR/R/alleleRto1.R HapEstXXR/R/single.snp.test.casecohort.R HapEstXXR/R/single.haplotype.test.binomial.R HapEstXXR/R/dec2bin.R HapEstXXR/R/allele1to2.R HapEstXXR/R/single.snp.test.R HapEstXXR/R/maf.R HapEstXXR/R/read.data.R HapEstXXR/R/single.snp.test.gaussian.R HapEstXXR/R/single.haplotype.test.families.R
HapEstXXR/MD5
HapEstXXR/DESCRIPTION
HapEstXXR/man
HapEstXXR/man/powerset.Rd HapEstXXR/man/single.snp.test.Rd HapEstXXR/man/HapEstXXR-package.Rd HapEstXXR/man/multi.snp.test.Rd HapEstXXR/man/makeHaploviewInputFile.Rd HapEstXXR/man/single.haplotype.test.Rd HapEstXXR/man/msr.Rd HapEstXXR/man/makePlinkInputFile.Rd HapEstXXR/man/coding.baseline.allele.Rd HapEstXXR/man/allele1to2.Rd HapEstXXR/man/order.families.Rd HapEstXXR/man/read.data.Rd HapEstXXR/man/maf.Rd HapEstXXR/man/read.haploview.Rd HapEstXXR/man/dec2bin.Rd HapEstXXR/man/catt.Rd HapEstXXR/man/itegeppXXR.Rd

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

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