order.families: Ordering of nuclear family data

In HapEstXXR: Multi-Locus Stepwise Regression

Description

order.families returns a permutation which rearranges the families into ascending famid, generation, and sex, if given.

Usage

order.families(famid, patid, fid, mid, sex = NA)

Arguments

famid	vector; Identifier for every family
patid	vector; Identifier for every individual
fid	vector; Identifier for father (0 = unkown)
mid	vector; Identifier for mother (0 = unkown)
sex	vector; Individuals' gender (1 = male, 2 = female, 0 = unkown

Author(s)

Sven Knueppel

Examples

fam <- as.character(c(c(1, 1, 1, 1), c(0, 0, 0, 0, 0)))
pid <- as.character(c(c(1, 2, 3, 4), c(7, 8, 9, 10, 11)))
mid <- as.character(c(c(3, 3, 0, 0), c(10, 10, 10, 0, 0)))
fid <- as.character(c(c(4, 4, 0, 0), c(11, 11, 11, 0, 0)))
sex <- as.character(c(c(0, 2, 2, 1), c(1, 1, 2, 2, 1)))

ordfam <- order.families (fam, pid, fid, mid, sex)
print((cbind(fam, pid, fid, mid, sex))[ordfam, ])

    

HapEstXXR documentation built on May 1, 2019, 10:54 p.m.