maf: Minor alle frequencies
In HapEstXXR: Multi-Locus Stepwise Regression
Description
Usage
Arguments
Details
Value
Author(s)
Description
Calculation of minor allele frequencies (MAF), call rate and asymptotic chisquare hardy-weinberg test
Usage
1
Arguments
geno
(m, n)-genotype matrix
m = number of individuals
type R: n = number of snps
marker.label
Labels for the markers.
Details
Call rate is defined by number of missing genotypes divided by sample size.
Testing deviation of the hardy-weinberg equilibirum is done by the usual
goodness-of-fit chisquare test: chi2 ~ sum( (observed-expected)^2/expected ).
Value
This function returns an matrix with 8 coulmns.
Author(s)
Sven Knueppel
HapEstXXR documentation built on May 1, 2019, 10:54 p.m.
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Description Usage Arguments Details Value Author(s)
Description
Calculation of minor allele frequencies (MAF), call rate and asymptotic chisquare hardy-weinberg test
Usage
1 |
Arguments
geno |
(m, n)-genotype matrix m = number of individuals type R: n = number of snps |
marker.label |
Labels for the markers. |
Details
Call rate is defined by number of missing genotypes divided by sample size.
Testing deviation of the hardy-weinberg equilibirum is done by the usual goodness-of-fit chisquare test: chi2 ~ sum( (observed-expected)^2/expected ).
Value
This function returns an matrix with 8 coulmns.
Author(s)
Sven Knueppel
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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