makeHaploviewInputFile: Make Haploview input files
In HapEstXXR: Multi-Locus Stepwise Regression

Description Usage Arguments Details Value Author(s) References See Also

Create two data sets (*.ped and *.info) as input files for Haploview

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makeHaploviewInputFile(famid, patid, fid, mid, sex,
    aff, geno, marker.name,  marker.position,
    haploview.pedfile, haploview.infofile)

`famid`	Family ID
`patid`	Individual ID
`fid`	Paternal ID
`mid`	Maternal ID
`sex`	1=male, 2=female, other=unknown
`aff`	disease phenotype (1=unaff, 2=aff, 0=missing/unkown)
`geno`	(n,m) genotype matrix (n=number of individuals, m=number of marker, 1-column for every marker, R-code: 1 = 1/1, 3 = 1/2, 2 = 2/2); All markers should be biallelic.
`marker.name`	marker name
`marker.position`	marker position
`haploview.pedfile`	specify target of linkage file
`haploview.infofile`	specify target of marker Information file

This function provides only limited options for creating Haploview input files. For more details see Haploview/URL: http://www.broadinstitute.org/mpg/haploview.

no return values.

Sven Knueppel

Barrett JC, Fry B, Maller J, Daly MJ. Haploview: analysis and visualization

of LD and haplotype maps. Bioinformatics. 2005; 21(2):263-265. [PubMed ID: 15297300]

Haploview/URL: http://www.broadinstitute.org/mpg/haploview

makePlinkInputFile, allele1to2

HapEstXXR documentation built on May 1, 2019, 10:54 p.m.