f.clustABC.MultiSource: f.clustABC.MultiSoucre

Description Usage Arguments

Description

Internal function of M_ABC: performs the final clustering.

Usage

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f.clustABC.MultiSource(res, numclust = NULL, distmeth = 1,
  linkage = "ward", alpha = 0.625, mds = FALSE)

Arguments

res

Matrix object whose rows are the base clusters determined in each iteration of the ABC algorithm.

numclust

The number of clusters. Default is NULL.

distmeth

Binary, indicating whether the ABC dissimilarities should be scaled by the total number of simulations. By default distmeth=1 indicating the dissimilarities should be left as is.

linkage

Choice of inter group dissimilarity (character) for the final clustering. Defaults to "ward.

alpha

The parameter alpha to be used in the "flexible" linkage of the agnes function. Defaults to 0.625 and is only used if the linkage is set to "flexible"

mds

Logical, indicating whether and MDS plot of the dissimilarities should be drawn. Default is FALSE


IntClust documentation built on May 2, 2019, 5:51 a.m.