ColorsNames: Function that annotates colors to their names

In IntClust: Integration of Multiple Data Sets with Clustering Techniques

Description

The ColorsNames function is used on the output of the ReorderToReference and matches the cluster numbers indicated by the cell with the names of the colors. This is necessary to produce the plot of the ComparePlot function and is therefore an internal function of this function but can also be applied separately.

Usage

ColorsNames(matrixColors, cols = NULL)

Arguments

matrixColors	The output of the ReorderToReference function.
cols	A character vector with the names of the colours to be used. Default is NULL.

Value

A matrix containing the hex code of the color that corresponds to each cell of the matrix to be colored. This function is called upon by the ComparePlot function.

Examples

data(fingerprintMat)
data(targetMat)
data(Colors1)

MCF7_F = Cluster(fingerprintMat,type="data",distmeasure="tanimoto",normalize=FALSE,
method=NULL,clust="agnes",linkage="flexible",gap=FALSE,maxK=55,StopRange=FALSE)
MCF7_T = Cluster(targetMat,type="data",distmeasure="tanimoto",normalize=FALSE,
method=NULL,clust="agnes",linkage="flexible",gap=FALSE,maxK=55,StopRange=FALSE)

L=list(MCF7_F,MCF7_T)
names=c("FP","TP")

MatrixColors=ReorderToReference(List=L,nrclusters=7,fusionsLog=TRUE,weightclust=TRUE,
names=names)

Names=ColorsNames(matrixColors=MatrixColors,cols=Colors1)

IntClust documentation built on May 2, 2019, 5:51 a.m.