Nothing
## ---- echo = FALSE, message = FALSE-------------------------------------------
knitr::opts_chunk$set(collapse = T, comment = "#>")
options(tibble.print_min = 4L, tibble.print_max = 4L)
library(LMest)
library(knitr)
opts_chunk$set(fig.align = "center",
fig.width = 6, fig.height = 5,
dev.args = list(pointsize=10),
collapse = TRUE, par = TRUE,
warning = FALSE, message = FALSE,
highlight = FALSE)
set.seed(1945)
## ---- message = FALSE, echo=1-------------------------------------------------
library(LMest)
cat(LMest:::Startup.Message(), sep="")
## -----------------------------------------------------------------------------
data("RLMSlong")
dim(RLMSlong)
str(RLMSlong)
## -----------------------------------------------------------------------------
data("PSIDlong")
dim(PSIDlong)
str(PSIDlong)
## -----------------------------------------------------------------------------
data(data_criminal_sim)
dim(data_criminal_sim)
str(data_criminal_sim)
## -----------------------------------------------------------------------------
data("NLSYlong")
dim(NLSYlong)
## -----------------------------------------------------------------------------
dt <- lmestData(data = NLSYlong, id = "id", time="time",
responsesFormula= anti+self ~NULL)
summary(dt, dataSummary="responses", varType=rep("c",ncol(dt$Y)))
## -----------------------------------------------------------------------------
data_criminal_sim<-data.frame(data_criminal_sim)
crimf <- data_criminal_sim[data_criminal_sim$sex == 2,]
dt1 <- lmestData(data = crimf, id = "id", time = "time")
summary(dt1, varType = rep("d",ncol(dt1$Y)))
## -----------------------------------------------------------------------------
fmBasic <- lmestFormula(data = RLMSlong, response = "value")
## -----------------------------------------------------------------------------
fmLatent <- lmestFormula(data = PSIDlong, response = "Y",
LatentInitial = "X", LatentTransition ="X")
## -----------------------------------------------------------------------------
fmLatent2 <- lmestFormula(data = PSIDlong, response = "Y",
LatentInitial = c("X1Race","X2Age","X3Age2","X9Income"),
LatentTransition =c("X1Race","X2Age","X3Age2","X9Income"))
## ---- eval=TRUE, add=TRUE, warning=FALSE, results='hide'---------------------
mod <- lmest(responsesFormula = fmLatent$responsesFormula,
index = c("id","time"),
data = PSIDlong, k = 2)
## ---- eval=TRUE, add=TRUE, warning=FALSE, results='hide'----------------------
mod <- lmest(responsesFormula = fmLatent$responsesFormula,
index = c("id","time"),
data = PSIDlong, k = 1:3)
## -----------------------------------------------------------------------------
print(mod)
## -----------------------------------------------------------------------------
se(mod)
## ---- eval=TRUE, add=TRUE, warning=FALSE--------------------------------------
mod2 <- lmest(responsesFormula = fmLatent$responsesFormula,
latentFormula = fmLatent$latentFormula,
index = c("id","time"),
data = PSIDlong, k = 2,
paramLatent = "multilogit",
start = 0, out_se=TRUE)
## ---- echo=TRUE, eval=TRUE, include=TRUE--------------------------------------
summary(mod2)
## ---- fig.width = 5, fig.height = 4-------------------------------------------
plot(mod2, what = "CondProb")
## -----------------------------------------------------------------------------
plot(mod2, what="transitions")
## -----------------------------------------------------------------------------
plot(mod2, what="marginal")
## ----results='hide', warning=FALSE--------------------------------------------
modc <- lmestCont(responsesFormula = anti + self ~ NULL,
latentFormula = ~ gender + childage + hispanic + black + pov +
momwork + married| gender + childage + hispanic + black+ pov+
momwork + married,
index = c("id", "time"),
data = dt$data,
k = 1:3,
modBasic=1,
output = TRUE,
tol=10^-1)
## -----------------------------------------------------------------------------
plot(modc,what="modSel")
## -----------------------------------------------------------------------------
plot(modc, what="density")
## -----------------------------------------------------------------------------
plot(modc,what="density",components=c(1,2))
## -----------------------------------------------------------------------------
plot(modc,what="transitions")
## -----------------------------------------------------------------------------
semodc<-se(modc)
## -----------------------------------------------------------------------------
TabBe <-cbind(modc$Be, semodc$seBe, modc$Be/semodc$seBe)
colnames(TabBe) <- c("estBe", "s.e.Be","t-test")
round(TabBe,3)
## -----------------------------------------------------------------------------
TabGa1 <- cbind(modc$Ga,semodc$seGa,modc$Ga/semodc$seGa)
colnames(TabGa1) <- c("estGa(1)","estGa(2)", "s.e.Ga(1)","s.e.Ga(2)", "t-test(1)","t-test(2)")
round(TabGa1,3)
## ----results='hide'-----------------------------------------------------------
responsesFormula <- lmestFormula(data = crimf,response = "y")$responsesFormula
modm <- lmestMixed(responsesFormula =responsesFormula,
index = c("id","time"),
k1 = 2, k2 = 2,
tol = 10^-3,
data = crimf)
## -----------------------------------------------------------------------------
summary(modm)
round(modm$Psi[2, , ], 3)
## ----search, include=TRUE, results='hide'-------------------------------------
out <- lmestSearch(responsesFormula = fmBasic$responsesFormula,
index = c("id","time"),
data = RLMSlong,version ="categorical", k = 1:4,
modBasic = 1, seed = 123)
## -----------------------------------------------------------------------------
summary(out)
## -----------------------------------------------------------------------------
mod4 <- out$out.single[[4]]
summary(mod4)
## -----------------------------------------------------------------------------
plot(mod4, what="CondProb")
## -----------------------------------------------------------------------------
dec <- lmestDecoding(mod)
head(dec$Ul)
head(dec$Ug)
## ---- include=TRUE, results='hide'--------------------------------------------
mboot <- bootstrap(modc, n = 581, B = 2, seed = 172)
## -----------------------------------------------------------------------------
mboot$seMu
## -----------------------------------------------------------------------------
draw3 <- drawLMbasic(est = mod4, format = "matrices", seed = 4321, n = 100)
head(draw3$Y)
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