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README.md
In LOMAR: Localization Microscopy Data Analysis
LOMAR
An R package to deal with point sets from single molecule localization microscopy.
This package provides three sets of functionalities:
- data input: read SMLM data as point sets either from csv files or from TIFF images
- registration: point sets registration using different algorithms
- topological data analysis: compute similarity between point sets using persistent homology
Installation
The package is available on CRAN.
(from the RStudio mirror)
install.packages("LOMAR")
To install the development version of this package, run (from within R):
library(devtools)
install_git('https://git.embl.de/heriche/lomar')
This package depends on these other packages:
* data.table
* FNN
* foreach
* parallel
* doParallel
* proxy
* reshape2
* pracma
* transport
* RANN
* ff
* aws
* dbscan
* EBImage (from Bioconductor)
Try the LOMAR package in your browser
Any scripts or data that you put into this service are public.
LOMAR documentation built on March 18, 2022, 6:05 p.m.
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LOMAR
An R package to deal with point sets from single molecule localization microscopy. This package provides three sets of functionalities: - data input: read SMLM data as point sets either from csv files or from TIFF images - registration: point sets registration using different algorithms - topological data analysis: compute similarity between point sets using persistent homology
Installation
The package is available on CRAN.
(from the RStudio mirror)
install.packages("LOMAR")
To install the development version of this package, run (from within R):
library(devtools)
install_git('https://git.embl.de/heriche/lomar')
This package depends on these other packages: * data.table * FNN * foreach * parallel * doParallel * proxy * reshape2 * pracma * transport * RANN * ff * aws * dbscan * EBImage (from Bioconductor)
Try the LOMAR package in your browser
Any scripts or data that you put into this service are public.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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