tests/lme.R

## stepAIC on an lme object: an example from Robert Cuffe
if(require(nlme)) {
    library(MASS)
    set.seed(321) # to be sure
    a <- data.frame( resp=rnorm(250), cov1=rnorm(250),
                    cov2=rnorm(250), group=rep(letters[1:10],25) )
    mod1 <- lme(resp~cov1, a, ~cov1|group, method="ML")
    mod2 <- stepAIC(mod1, scope=list(upper=~(cov1+cov2)^2, lower=~1) )

    beav <- beav2
    set.seed(123)
    beav$dummy <- rnorm(nrow(beav))
    beav.gls <- gls(temp ~ activ + dummy, data = beav,
                    corr = corAR1(0.8), method = "ML")
    stepAIC(beav.gls)

## for future terms-based nlme
    FIT <- glmmPQL(y ~ trt + I(week > 2), random = ~ 1 | ID,
                   family = binomial, data = bacteria)
    form <- formula(FIT)
    stopifnot(form[[2]] == "y")
}

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MASS documentation built on May 4, 2023, 9:07 a.m.