Nothing
InternalSES.glmm = function(target, reps, group, dataset, max_k = 3, threshold = 0.05, test = NULL, ini, wei = NULL, user_test = NULL,
hash = FALSE, varsize, stat_hash, pvalue_hash, targetID, slopes, ncores) {
#univariate feature selection test
if ( is.null(ini) ) {
univariateModels <- glmm.univregs(target = target, reps = reps, id = group, dataset = dataset, targetID = targetID, test = test, wei = wei,
slopes = slopes, ncores = ncores)
} else univariateModels <- ini
pvalues = univariateModels$pvalue;
stats = univariateModels$stat;
stat_hash = univariateModels$stat_hash;
pvalue_hash = univariateModels$pvalue_hash;
#if we dont have any associations , return
if ( min(pvalues , na.rm = TRUE) > threshold ) {
#cat('No associations!');
results = NULL;
results$selectedVars = c();
class(results$selectedVars) = "numeric";
results$selectedVarsOrder = c();
class(results$selectedVarsOrder) = "numeric";
results$queues = c();
class(results$queues) = 'list';
results$signatures = matrix(nrow=1,ncol=1);
class(results$signatures) = 'matrix';
results$hashObject = NULL;
class(results$hashObject) = 'list';
class(results$univ) = 'list';
results$pvalues = pvalues;
results$stats = stats;
results$univ = univariateModels;
results$max_k = max_k;
results$threshold = threshold;
results$slope = slopes
results$n.tests = length(stats)
return(results);
}
#Initialize the data structs
selectedVars = numeric(varsize);
selectedVarsOrder = numeric(varsize);
queues = vector('list' , varsize);
queues <- lapply(1:varsize , function(i){queues[[i]] = i;})
#select the variable with the highest association
selectedVar = which.max(stats);
selectedVars[selectedVar] = 1;
selectedVarsOrder[selectedVar] = 1; #CHANGE
#lets check the first selected var
#remaining variables to be considered
remainingVars = rep(1,varsize);
remainingVars[selectedVar] = 0;
remainingVars[pvalues > threshold] = 0;
if (targetID > 0) remainingVars[targetID] = 0;
################ main ses loop ################
#main SES loop
#loop until there are not remaining vars
loop = any(as.logical(remainingVars));
while(loop) {
#lets find the equivalences
IdEq_results <- IdentifyEquivalence.glmm(queues, target, reps, group, dataset, test, wei, threshold, max_k, selectedVars, pvalues, stats, remainingVars, univariateModels, selectedVarsOrder, hash=hash, stat_hash=stat_hash, pvalue_hash=pvalue_hash, slopes = slopes);
queues = IdEq_results$queues;
selectedVars = IdEq_results$selectedVars;
remainingVars = IdEq_results$remainingVars;
pvalues = IdEq_results$pvalues;
stats = IdEq_results$stats;
stat_hash=IdEq_results$stat_hash;
pvalue_hash=IdEq_results$pvalue_hash;
#lets find the variable with the max min association
max_min_results = max_min_assoc.glmm(target, reps, group, dataset, test, wei, threshold, max_k, selectedVars, pvalues, stats, remainingVars, univariateModels, selectedVarsOrder, hash=hash, stat_hash=stat_hash, pvalue_hash=pvalue_hash, slopes = slopes);
selectedVar = max_min_results$selected_var;
selectedPvalue = max_min_results$selected_pvalue;
remainingVars = max_min_results$remainingVars;
pvalues = max_min_results$pvalues;
stats = max_min_results$stats;
stat_hash=max_min_results$stat_hash;
pvalue_hash=max_min_results$pvalue_hash;
#if the selected variable is associated with target , add it to the selected variables
if (selectedPvalue <= threshold) {
selectedVars[selectedVar] = 1;
selectedVarsOrder[selectedVar] = max(selectedVarsOrder) + 1;
remainingVars[selectedVar] = 0;
}
loop = any(as.logical(remainingVars));
}
#lets find the variables to be discarded
IdEq_results <- IdentifyEquivalence.glmm(queues, target, reps, group, dataset, test, wei, threshold, max_k, selectedVars, pvalues, stats, remainingVars, univariateModels, selectedVarsOrder, hash=hash, stat_hash=stat_hash, pvalue_hash=pvalue_hash, slopes = slopes);
queues = IdEq_results$queues;
selectedVars = IdEq_results$selectedVars;
pvalues = IdEq_results$pvalues;
stats = IdEq_results$stats;
remainingVars = IdEq_results$remainingVars;
stat_hash=IdEq_results$stat_hash;
pvalue_hash=IdEq_results$pvalue_hash;
selectedVarsOrder[which(!selectedVars)] = varsize;#
numberofSelectedVars = sum(selectedVars);#
selectedVarsOrder = sort(selectedVarsOrder);#
# selectedVars = selectedVarsOrder[1:numberofSelectedVars];
# queues correctness
all_queues = queues
queues = queues[which(selectedVars==1)];
queues <- lapply(1:length(queues) , function(i){ queues[[i]] = unique(queues[[i]]); });
#adjusting the results
if (targetID > 0) {
toAdjust <- which(selectedVars > targetID);
selectedVars[toAdjust] = selectedVars[toAdjust] + 1;
}
results = NULL;
results$selectedVars = which(selectedVars == 1);
svorder = sort(pvalues[results$selectedVars] , index.return = TRUE);
svorder = results$selectedVars[svorder$ix];
results$selectedVarsOrder = svorder;
results$queues = queues;
results$signatures = as.matrix(do.call(expand.grid, results$queues))
hashObject = NULL;
hashObject$stat_hash = stat_hash;
hashObject$pvalue_hash = pvalue_hash;
results$hashObject = hashObject;
class(results$hashObject) = 'list';
results$pvalues = pvalues;
results$stats = stats;
results$univ = univariateModels;
results$max_k = max_k;
results$threshold = threshold;
results$slope = slopes
results$n.tests = length(stats) + length( hashObject$stat_hash )
return(results);
}
Any scripts or data that you put into this service are public.
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.