subsample_fastq | R Documentation |
subsample_fastq(fastq_files, folder_output = "subsample", nb_seq = 1000)
fastq_files |
The path to one fastq file or a list of fastq files (see examples) |
folder_output |
The path to a folder for output files |
nb_seq |
(int; default 1000) : Number of sequences kept (every sequence spread across 4 lines) |
Nothing, create subsampled fastq files in a folder
Adrien Taudière
ex_file <- system.file("extdata", "ex_R1_001.fastq.gz",
package = "MiscMetabar",
mustWork = TRUE
)
subsample_fastq(ex_file, paste0(tempdir(), "/output_fastq"))
subsample_fastq(list_fastq_files("extdata"), paste0(tempdir(), "/output_fastq"), n = 10)
unlink(paste0(tempdir(), "/output_fastq"), recursive = TRUE)
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