summary_plot_pq: Summarize a 'phyloseq-class' object using a plot.

In MiscMetabar: Miscellaneous Functions for Metabarcoding Analysis

Summarize a phyloseq-class object using a plot.

Description

Graphical representation of a phyloseq object.

Usage

summary_plot_pq(
  physeq,
  add_info = TRUE,
  min_seq_samples = 500,
  clean_pq = TRUE
)

Arguments

physeq	(required): a phyloseq-class object obtained using the phyloseq package.
add_info	Does the bottom down corner contain extra informations?
min_seq_samples	(int): Used only when add_info is set to true to print the number of samples with less sequences than this number.
clean_pq	(logical): Does the phyloseq object is cleaned using the clean_pq() function?

Value

A ggplot2 object

Examples

summary_plot_pq(data_fungi)
summary_plot_pq(data_fungi, add_info = FALSE) + scale_fill_viridis_d()

MiscMetabar documentation built on Oct. 8, 2024, 1:07 a.m.