View source: R/table_functions.R
tax_datatable | R Documentation |
phyloseq-class
objecttax_datatable(
physeq,
abundance = TRUE,
taxonomic_level = NULL,
modality = NULL,
...
)
physeq |
(required): a |
abundance |
(default: TRUE) Does the number of sequences is print |
taxonomic_level |
(default: NULL) a vector of selected taxonomic level using their column numbers (e.g. taxonomic_level = 1:7) |
modality |
(default: NULL) A sample modality to split OTU abundancy by level of the modality |
... |
Other argument for the datatable function |
A datatable
Adrien Taudière
data("GlobalPatterns", package = "phyloseq")
if (requireNamespace("DT")) {
tax_datatable(subset_taxa(
GlobalPatterns,
rowSums(GlobalPatterns@otu_table) > 10000
))
# Using modality
tax_datatable(GlobalPatterns,
modality = GlobalPatterns@sam_data$SampleType
)
}
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