View source: R/overlap_network.R

overlap.network | R Documentation |

This function is deprecated. Please see `overlap_network`

instead

overlap.network( netfacs.list, min.prob = 0, min.count = 5, significance = 0.01, specificity = 0.1, ignore.element = NULL, clusters = FALSE, plot.bubbles = FALSE )

`netfacs.list` |
list of objects resulting from |

`min.prob` |
minimum conditional probability that should be shown in the graph |

`min.count` |
minimum number of times that a combination should occur before being included in the graph |

`significance` |
sets the level of significance that combinations have to pass before added to the network |

`specificity` |
for the 'reduced' graph, select only elements that surpass this context specificity value |

`ignore.element` |
string vector, can be used to exclude certain elements when creating the plots |

`clusters` |
boolean; if TRUE, the cluster_fast_greedy algorithm is used to detect underlying community structure, based on the occurrence probability network |

`plot.bubbles` |
if TRUE, then the nodes in the network plots will be surrounded by bubbles; if FALSE, the edges connect the names directly |

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