obs_richness: Observed Richness
In OTUtable: North Temperate Lakes - Microbial Observatory 16S Time Series Data and Functions
Description
Usage
Arguments
Value
Note
Author(s)
Examples
Description
Calculates observed richness on a single column of relative abundance data.
Usage
1
Arguments
sample
A vector of relative abundance data, typically a single column in a matrix
Value
Returns a single number indicating the number of taxa in the tested sample
Note
Use apply functions to calculate richness for all samples in a matrix
Author(s)
Alexandra Linz <amlinz16@gmail.com>
Examples
1
2
data(otu_table)
richness <- apply(otu_table, 2, obs_richness)
OTUtable documentation built on May 1, 2019, 10:51 p.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description Usage Arguments Value Note Author(s) Examples
Description
Calculates observed richness on a single column of relative abundance data.
Usage
1 |
Arguments
sample |
A vector of relative abundance data, typically a single column in a matrix |
Value
Returns a single number indicating the number of taxa in the tested sample
Note
Use apply functions to calculate richness for all samples in a matrix
Author(s)
Alexandra Linz <amlinz16@gmail.com>
Examples
1 2 | data(otu_table)
richness <- apply(otu_table, 2, obs_richness)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.