plot_column: Plot DO or temperature data from a depth profile over time

In OTUtable: North Temperate Lakes - Microbial Observatory 16S Time Series Data and Functions

Description

Takes output from make_do_matrix or make_temp_matrix and plots using filled.contour()

Usage

plot_column(data_matrix, title)

Arguments

data_matrix	A matrix output by make_do_matrix() or make_temp_matrix()
title	The title you would like on the plot

Value

Plots a filled contour plot showing the water column over time

Note

Depends on the function rotate(). The functions make_do_matrix() and make_temp_matrix() fill in missing values with the average of the measurement at each depth above and below; however, if missing values are present in the matrix for plotting, these will appear as white space on the plot.

Author(s)

Alexandra Linz <[e-mail]>

Examples

data(metadata)
temp <- make_temp_matrix("TBE.....07", metadata)
plot_column(temp, "Trout Bog 2007 Temperature")

Example output

OTUtable documentation built on May 1, 2019, 10:51 p.m.