year_subset: Subset samples by a specific year
In OTUtable: North Temperate Lakes - Microbial Observatory 16S Time Series Data and Functions
Description
Usage
Arguments
Value
Author(s)
Examples
Description
Takes the year value in the last two digits of the sample ID and allows selection of a single year of data. Can be performed on tables at higher taxonomic levels generated by combine_otus(), or on tables already subset by bog_subset().
Usage
1
year_subset(year_id, table)
Arguments
table
A table containing the relative abundances of each taxa
year_id
Two digit code indicating the last two digits of the year of interest (05, 07, 08, 09) surrounded by quotes. Regular expressions can be used.
Value
Returns an OTU table containing only samples from the specified year
Author(s)
Alexandra Linz <amlinz16@gmail.com>
Examples
1
2
3
4
5
6
data(otu_table)
seven <- year_subset("07", otu_table)
# Select two years at once
two_years <- year_subset("07|08", otu_table)
OTUtable documentation built on May 1, 2019, 10:51 p.m.
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Description Usage Arguments Value Author(s) Examples
Description
Takes the year value in the last two digits of the sample ID and allows selection of a single year of data. Can be performed on tables at higher taxonomic levels generated by combine_otus(), or on tables already subset by bog_subset().
Usage
1 | year_subset(year_id, table)
|
Arguments
table |
A table containing the relative abundances of each taxa |
year_id |
Two digit code indicating the last two digits of the year of interest (05, 07, 08, 09) surrounded by quotes. Regular expressions can be used. |
Value
Returns an OTU table containing only samples from the specified year
Author(s)
Alexandra Linz <amlinz16@gmail.com>
Examples
1 2 3 4 5 6 | data(otu_table)
seven <- year_subset("07", otu_table)
# Select two years at once
two_years <- year_subset("07|08", otu_table)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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